Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   DQL23_RS02870 Genome accession   NZ_LS483341
Coordinates   613190..613855 (+) Length   221 a.a.
NCBI ID   WP_012000103.1    Uniprot ID   A8AVW5
Organism   Streptococcus gordonii strain NCTC7865     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 608190..618855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL23_RS02845 (NCTC7865_00567) - 608354..609757 (+) 1404 WP_060552931.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  DQL23_RS02850 (NCTC7865_00568) - 609754..610140 (+) 387 WP_060552930.1 S1 RNA-binding domain-containing protein -
  DQL23_RS02855 (NCTC7865_00569) cysK 610177..611106 (-) 930 WP_008808600.1 cysteine synthase A -
  DQL23_RS02860 (NCTC7865_00570) - 611204..611836 (-) 633 WP_060552929.1 YigZ family protein -
  DQL23_RS02865 (NCTC7865_00571) comFA/cflA 611892..613193 (+) 1302 WP_060552928.1 DEAD/DEAH box helicase Machinery gene
  DQL23_RS02870 (NCTC7865_00572) comFC/cflB 613190..613855 (+) 666 WP_012000103.1 ComF family protein Machinery gene
  DQL23_RS02875 (NCTC7865_00573) hpf 613940..614482 (+) 543 WP_012000104.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  DQL23_RS02880 (NCTC7865_00573) - 614761..616317 (+) 1557 WP_012000104.1 16S ribosomal RNA -
  DQL23_RS02885 (NCTC7865_00573) - 616372..616444 (+) 73 WP_012000104.1 tRNA-Ala -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25895.01 Da        Isoelectric Point: 8.4502

>NTDB_id=1137458 DQL23_RS02870 WP_012000103.1 613190..613855(+) (comFC/cflB) [Streptococcus gordonii strain NCTC7865]
MKQCLICLAILEEQLNFMDLLLLKRKENDICQECLNSFEEIPEEHCPTCYKAGDKKLCKDCQYWQERGLEVAHKSLYTYN
KAMKDYFSRYKFQGDYLLRNVFALSLRKELKNFQSYTILSIPLSESKMRKRGFNQVSGLLEAAQIPYQEILKKKESQTQS
SKDRKERLENTGNFYMIENTKIPKKILLVDDIYTTGATLQDAKLTLFENGAKEIMTFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=1137458 DQL23_RS02870 WP_012000103.1 613190..613855(+) (comFC/cflB) [Streptococcus gordonii strain NCTC7865]
ATGAAACAATGTCTAATCTGCTTAGCTATATTAGAAGAGCAGTTGAATTTTATGGATTTATTACTATTAAAAAGAAAAGA
AAATGACATTTGTCAAGAGTGCTTAAATTCCTTCGAAGAAATTCCAGAAGAACATTGTCCAACCTGTTATAAAGCTGGGG
ACAAAAAATTGTGCAAAGATTGTCAGTACTGGCAGGAAAGAGGATTAGAAGTAGCACATAAAAGTTTGTACACTTATAAT
AAAGCAATGAAAGACTATTTTAGTCGCTACAAATTTCAAGGAGATTATCTTTTAAGAAATGTATTTGCCTTAAGCCTAAG
AAAAGAGTTAAAAAATTTTCAAAGCTACACAATTTTAAGCATTCCTTTAAGTGAAAGTAAGATGAGAAAAAGAGGATTCA
ATCAAGTGTCAGGATTACTTGAAGCTGCACAAATACCTTATCAAGAAATATTAAAGAAAAAAGAAAGTCAAACTCAGTCT
AGTAAAGACAGAAAAGAAAGATTAGAAAACACAGGGAATTTTTACATGATTGAAAATACGAAAATCCCGAAAAAAATTTT
ACTTGTAGATGACATCTATACAACAGGAGCAACCTTGCAAGATGCAAAATTGACATTATTTGAAAATGGAGCGAAAGAAA
TCATGACATTTTCATTAGCAAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8AVW5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

49.772

99.095

0.493
  comFC/cflB Streptococcus mitis NCTC 12261

49.315

99.095

0.489
  comFC/cflB Streptococcus pneumoniae Rx1

49.315

99.095

0.489
  comFC/cflB Streptococcus pneumoniae D39

49.315

99.095

0.489
  comFC/cflB Streptococcus pneumoniae R6

49.315

99.095

0.489
  comFC/cflB Streptococcus mitis SK321

48.858

99.095

0.484

Multiple sequence alignment