Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | DQL04_RS01845 | Genome accession | NZ_LS483340 |
| Coordinates | 338307..338798 (+) | Length | 163 a.a. |
| NCBI ID | WP_002983122.1 | Uniprot ID | A0A9X8XIP7 |
| Organism | Streptococcus pyogenes strain NCTC12062 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 333307..343798
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQL04_RS01815 (NCTC12062_00361) | - | 334496..334996 (+) | 501 | WP_021775467.1 | phosphatase PAP2 family protein | - |
| DQL04_RS01820 (NCTC12062_00362) | trxA | 335059..335391 (+) | 333 | WP_256363924.1 | thioredoxin | - |
| DQL04_RS01825 (NCTC12062_00363) | - | 335443..336030 (-) | 588 | WP_047235673.1 | helix-turn-helix domain-containing protein | - |
| DQL04_RS01830 (NCTC12062_00364) | mutY | 336207..337361 (-) | 1155 | WP_168389419.1 | A/G-specific adenine glycosylase | - |
| DQL04_RS01835 (NCTC12062_00365) | - | 337529..337822 (+) | 294 | WP_002983113.1 | hypothetical protein | - |
| DQL04_RS01840 (NCTC12062_00366) | rpsF | 337995..338285 (+) | 291 | WP_002983117.1 | 30S ribosomal protein S6 | - |
| DQL04_RS01845 (NCTC12062_00367) | ssb | 338307..338798 (+) | 492 | WP_002983122.1 | single-stranded DNA-binding protein | Machinery gene |
| DQL04_RS01850 (NCTC12062_00368) | rpsR | 338963..339202 (+) | 240 | WP_002983142.1 | 30S ribosomal protein S18 | - |
| DQL04_RS01855 (NCTC12062_00369) | - | 339335..339991 (-) | 657 | WP_002983144.1 | DUF1129 domain-containing protein | - |
| DQL04_RS01860 (NCTC12062_00370) | - | 340124..341068 (-) | 945 | WP_002983147.1 | magnesium transporter CorA family protein | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 17981.76 Da Isoelectric Point: 4.8894
>NTDB_id=1137414 DQL04_RS01845 WP_002983122.1 338307..338798(+) (ssb) [Streptococcus pyogenes strain NCTC12062]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF
Nucleotide
Download Length: 492 bp
>NTDB_id=1137414 DQL04_RS01845 WP_002983122.1 338307..338798(+) (ssb) [Streptococcus pyogenes strain NCTC12062]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCCTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCCTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.884 |
100 |
0.632 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
59.195 |
100 |
0.632 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
57.547 |
65.031 |
0.374 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
54.128 |
66.871 |
0.362 |