Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DQL03_RS07240 Genome accession   NZ_LS483337
Coordinates   1435522..1436013 (-) Length   163 a.a.
NCBI ID   WP_023605268.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12047     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1430522..1441013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL03_RS07225 (NCTC12047_01433) - 1433253..1434197 (+) 945 WP_002983147.1 magnesium transporter CorA family protein -
  DQL03_RS07230 (NCTC12047_01434) - 1434329..1434985 (+) 657 WP_002983144.1 DUF1129 domain-containing protein -
  DQL03_RS07235 (NCTC12047_01435) rpsR 1435118..1435357 (-) 240 WP_002983142.1 30S ribosomal protein S18 -
  DQL03_RS07240 (NCTC12047_01436) ssb 1435522..1436013 (-) 492 WP_023605268.1 single-stranded DNA-binding protein Machinery gene
  DQL03_RS07245 (NCTC12047_01437) rpsF 1436035..1436325 (-) 291 WP_002983117.1 30S ribosomal protein S6 -
  DQL03_RS07250 (NCTC12047_01438) - 1436498..1436791 (-) 294 WP_002983113.1 hypothetical protein -
  DQL03_RS07255 (NCTC12047_01439) mutY 1436959..1438113 (+) 1155 WP_002983107.1 A/G-specific adenine glycosylase -
  DQL03_RS07260 (NCTC12047_01440) - 1438290..1438883 (+) 594 WP_032464539.1 helix-turn-helix domain-containing protein -
  DQL03_RS07265 (NCTC12047_01441) trxA 1438929..1439261 (-) 333 WP_256363924.1 thioredoxin -
  DQL03_RS07270 (NCTC12047_01442) - 1439324..1439824 (-) 501 WP_023609923.1 phosphatase PAP2 family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17993.81 Da        Isoelectric Point: 4.8894

>NTDB_id=1137267 DQL03_RS07240 WP_023605268.1 1435522..1436013(-) (ssb) [Streptococcus pyogenes strain NCTC12047]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNISSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=1137267 DQL03_RS07240 WP_023605268.1 1435522..1436013(-) (ssb) [Streptococcus pyogenes strain NCTC12047]
ATGATTAATAATGTAGTACTAGTTGGTCGCATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAGCGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCTTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGGTTTAACAATAACATTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACACCTAACTTTGGAAGAGATGATAGCCCATTTGGCAATTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.884

100

0.632
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.195

100

0.632
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

65.031

0.374
  ssbB/cilA Streptococcus pneumoniae TIGR4

54.128

66.871

0.362

Multiple sequence alignment