Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | DQL28_RS01770 | Genome accession | NZ_LS483334 |
| Coordinates | 323732..324223 (+) | Length | 163 a.a. |
| NCBI ID | WP_002983122.1 | Uniprot ID | A0A9X8XIP7 |
| Organism | Streptococcus pyogenes strain NCTC12050 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 318732..329223
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQL28_RS01740 (NCTC12050_00339) | - | 320022..320522 (+) | 501 | WP_172450021.1 | phosphatase PAP2 family protein | - |
| DQL28_RS01745 (NCTC12050_00340) | trxA | 320585..320917 (+) | 333 | WP_001932060.1 | thioredoxin | - |
| DQL28_RS01750 (NCTC12050_00341) | - | 320969..321556 (-) | 588 | Protein_285 | helix-turn-helix domain-containing protein | - |
| DQL28_RS01755 (NCTC12050_00342) | mutY | 321632..322786 (-) | 1155 | WP_317582603.1 | A/G-specific adenine glycosylase | - |
| DQL28_RS01760 (NCTC12050_00343) | - | 322954..323247 (+) | 294 | WP_002983113.1 | hypothetical protein | - |
| DQL28_RS01765 (NCTC12050_00344) | rpsF | 323420..323710 (+) | 291 | WP_002983117.1 | 30S ribosomal protein S6 | - |
| DQL28_RS01770 (NCTC12050_00345) | ssb | 323732..324223 (+) | 492 | WP_002983122.1 | single-stranded DNA-binding protein | Machinery gene |
| DQL28_RS01775 (NCTC12050_00346) | rpsR | 324388..324627 (+) | 240 | WP_002983142.1 | 30S ribosomal protein S18 | - |
| DQL28_RS01780 (NCTC12050_00347) | - | 324760..325416 (-) | 657 | WP_002983144.1 | DUF1129 domain-containing protein | - |
| DQL28_RS01785 (NCTC12050_00348) | - | 325548..326492 (-) | 945 | WP_002983147.1 | magnesium transporter CorA family protein | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 17981.76 Da Isoelectric Point: 4.8894
>NTDB_id=1137071 DQL28_RS01770 WP_002983122.1 323732..324223(+) (ssb) [Streptococcus pyogenes strain NCTC12050]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF
Nucleotide
Download Length: 492 bp
>NTDB_id=1137071 DQL28_RS01770 WP_002983122.1 323732..324223(+) (ssb) [Streptococcus pyogenes strain NCTC12050]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCCTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTATTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCCTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTATTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.884 |
100 |
0.632 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
59.195 |
100 |
0.632 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
57.547 |
65.031 |
0.374 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
54.128 |
66.871 |
0.362 |