Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | DQL30_RS01935 | Genome accession | NZ_LS483333 |
| Coordinates | 346606..347097 (+) | Length | 163 a.a. |
| NCBI ID | WP_002983122.1 | Uniprot ID | A0A9X8XIP7 |
| Organism | Streptococcus pyogenes strain NCTC12048 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 341606..352097
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQL30_RS01905 (NCTC12048_00379) | - | 342896..343396 (+) | 501 | WP_015055998.1 | phosphatase PAP2 family protein | - |
| DQL30_RS01910 (NCTC12048_00380) | trxA | 343459..343791 (+) | 333 | WP_001932060.1 | thioredoxin | - |
| DQL30_RS01915 (NCTC12048_00381) | - | 343843..344430 (-) | 588 | WP_038434251.1 | helix-turn-helix domain-containing protein | - |
| DQL30_RS01920 (NCTC12048_00382) | mutY | 344506..345660 (-) | 1155 | WP_002988276.1 | A/G-specific adenine glycosylase | - |
| DQL30_RS01925 (NCTC12048_00383) | - | 345828..346121 (+) | 294 | WP_002983113.1 | hypothetical protein | - |
| DQL30_RS01930 (NCTC12048_00384) | rpsF | 346294..346584 (+) | 291 | WP_002983117.1 | 30S ribosomal protein S6 | - |
| DQL30_RS01935 (NCTC12048_00385) | ssb | 346606..347097 (+) | 492 | WP_002983122.1 | single-stranded DNA-binding protein | Machinery gene |
| DQL30_RS01940 (NCTC12048_00386) | rpsR | 347262..347501 (+) | 240 | WP_002983142.1 | 30S ribosomal protein S18 | - |
| DQL30_RS01945 (NCTC12048_00387) | - | 347634..348290 (-) | 657 | WP_111713615.1 | DUF1129 domain-containing protein | - |
| DQL30_RS01950 (NCTC12048_00388) | - | 348423..349367 (-) | 945 | WP_111713616.1 | magnesium transporter CorA family protein | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 17981.76 Da Isoelectric Point: 4.8894
>NTDB_id=1137017 DQL30_RS01935 WP_002983122.1 346606..347097(+) (ssb) [Streptococcus pyogenes strain NCTC12048]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF
Nucleotide
Download Length: 492 bp
>NTDB_id=1137017 DQL30_RS01935 WP_002983122.1 346606..347097(+) (ssb) [Streptococcus pyogenes strain NCTC12048]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCCTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCCTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.884 |
100 |
0.632 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
59.195 |
100 |
0.632 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
57.547 |
65.031 |
0.374 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
54.128 |
66.871 |
0.362 |