Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   DQL47_RS07255 Genome accession   NZ_LS483328
Coordinates   1510569..1511291 (-) Length   240 a.a.
NCBI ID   WP_111690276.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC12090     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1505569..1516291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL47_RS07230 (NCTC12090_01460) pstB 1505734..1506486 (-) 753 WP_012677665.1 phosphate ABC transporter ATP-binding protein PstB -
  DQL47_RS07235 (NCTC12090_01461) pstA 1506488..1507303 (-) 816 WP_111690274.1 phosphate ABC transporter permease PstA -
  DQL47_RS07240 (NCTC12090_01462) pstC 1507296..1508159 (-) 864 WP_043031091.1 phosphate ABC transporter permease subunit PstC -
  DQL47_RS07245 (NCTC12090_01463) - 1508229..1509101 (-) 873 WP_037581704.1 substrate-binding domain-containing protein -
  DQL47_RS07250 (NCTC12090_01464) pnpS 1509260..1510585 (-) 1326 WP_111690275.1 two-component system histidine kinase PnpS -
  DQL47_RS07255 (NCTC12090_01465) vicR 1510569..1511291 (-) 723 WP_111690276.1 response regulator transcription factor Regulator
  DQL47_RS10285 (NCTC12090_01466) - 1511463..1511618 (+) 156 WP_012515968.1 SPJ_0845 family protein -
  DQL47_RS07260 (NCTC12090_01467) - 1511659..1512561 (+) 903 WP_021320980.1 permease -
  DQL47_RS07265 (NCTC12090_01468) - 1512561..1513376 (+) 816 WP_111690277.1 TIGR03943 family putative permease subunit -
  DQL47_RS07270 (NCTC12090_01469) - 1513561..1514982 (-) 1422 WP_111690278.1 glycoside hydrolase family 1 protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 28109.55 Da        Isoelectric Point: 6.1653

>NTDB_id=1136748 DQL47_RS07255 WP_111690276.1 1510569..1511291(-) (vicR) [Streptococcus equi subsp. zooepidemicus strain NCTC12090]
MTKRVLLVDDEEPILRLLDYHLAKEGFVTEIVTDGRTALALAEREPYDFIVLDIMLPQLDGIEVCKRLRAKGSKTPIMMV
SAKSDEFDKVLALELGADDYVTKPFSLRELLARVKAILRRTEAEISGDGEERREPFYTMSQLRLYPERHEVYKDKELLPL
TPKEYELLLYLMKHPNMTLTRERLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKFKELKNDRTS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=1136748 DQL47_RS07255 WP_111690276.1 1510569..1511291(-) (vicR) [Streptococcus equi subsp. zooepidemicus strain NCTC12090]
ATGACAAAACGAGTATTATTAGTAGATGATGAGGAGCCTATCTTAAGGCTACTGGATTATCACTTGGCCAAGGAGGGCTT
TGTGACAGAGATAGTAACAGATGGCCGTACTGCCTTGGCATTAGCTGAAAGAGAACCTTATGATTTTATTGTGTTAGATA
TTATGCTGCCGCAATTAGACGGTATCGAGGTCTGCAAAAGGCTTCGTGCTAAGGGAAGTAAAACCCCAATTATGATGGTT
TCTGCTAAAAGTGATGAATTTGACAAGGTTTTGGCTTTGGAACTGGGGGCAGATGATTATGTGACCAAGCCCTTTAGTCT
TAGAGAATTATTAGCGCGTGTCAAGGCTATTTTAAGGCGCACTGAAGCAGAGATTTCTGGTGATGGTGAGGAGCGTCGTG
AGCCTTTTTATACGATGAGTCAATTGCGTCTGTACCCAGAGCGACATGAGGTCTATAAGGACAAGGAGCTATTGCCGTTA
ACCCCAAAGGAATATGAGCTACTGCTCTATCTCATGAAGCACCCTAATATGACCTTGACGCGTGAGCGGCTATTAGAGCG
TATCTGGGGTTATGACTTTGGCCAAGAAACACGTCTGGTAGACGTTCATATTGGCAAGCTCAGAGAAAAAATTGAGGACA
ATCCTAAGGCGCCTCAGTATATTCAAACCATTCGCGGCTATGGATACAAATTTAAGGAGCTAAAGAATGATAGGACATCT
TAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(158-231)

Response regulator receiver domain (Response_reg)

(5-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

52.155

96.667

0.504
  micA Streptococcus pneumoniae Cp1015

50

95.833

0.479
  covR Lactococcus lactis subsp. lactis strain DGCC12653

44.444

97.5

0.433
  covR Streptococcus salivarius strain HSISS4

40.773

97.083

0.396

Multiple sequence alignment