Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   DQL35_RS07085 Genome accession   NZ_LS483325
Coordinates   1465233..1465955 (-) Length   240 a.a.
NCBI ID   WP_043039157.1    Uniprot ID   A0AAX2LJU3
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC7022     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1460233..1470955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL35_RS07060 (NCTC7022_01420) pstB 1460398..1461150 (-) 753 WP_012677665.1 phosphate ABC transporter ATP-binding protein PstB -
  DQL35_RS07065 (NCTC7022_01421) pstA 1461152..1461967 (-) 816 WP_043039154.1 phosphate ABC transporter permease PstA -
  DQL35_RS07070 (NCTC7022_01422) pstC 1461960..1462823 (-) 864 WP_043039155.1 phosphate ABC transporter permease subunit PstC -
  DQL35_RS07075 (NCTC7022_01423) - 1462893..1463765 (-) 873 WP_042357068.1 substrate-binding domain-containing protein -
  DQL35_RS07080 (NCTC7022_01424) pnpS 1463924..1465249 (-) 1326 WP_043039156.1 two-component system histidine kinase PnpS -
  DQL35_RS07085 (NCTC7022_01425) vicR 1465233..1465955 (-) 723 WP_043039157.1 response regulator transcription factor Regulator
  DQL35_RS10670 (NCTC7022_01426) - 1466366..1466521 (+) 156 WP_042670938.1 SPJ_0845 family protein -
  DQL35_RS07090 (NCTC7022_01427) - 1466562..1467464 (+) 903 WP_021320980.1 permease -
  DQL35_RS07095 (NCTC7022_01428) - 1467464..1468279 (+) 816 WP_042357070.1 TIGR03943 family putative permease subunit -
  DQL35_RS07100 (NCTC7022_01429) - 1468465..1469886 (-) 1422 WP_012679829.1 glycoside hydrolase family 1 protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 28083.53 Da        Isoelectric Point: 6.1653

>NTDB_id=1136577 DQL35_RS07085 WP_043039157.1 1465233..1465955(-) (vicR) [Streptococcus equi subsp. zooepidemicus strain NCTC7022]
MTKRVLLVDDEEPILKLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLDGIEVCKRLRAKGSKTPIMMV
SAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTEAEISGDGEERREPFYTMSQLRLYPERHEVYKDKELLPL
TPKEYELLLYLMKHPNMTLTRERLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKFKELKNDRTS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=1136577 DQL35_RS07085 WP_043039157.1 1465233..1465955(-) (vicR) [Streptococcus equi subsp. zooepidemicus strain NCTC7022]
ATGACAAAACGAGTATTATTAGTAGATGATGAGGAGCCTATCTTAAAGCTACTGGATTATCACTTGGCCAAGGAGGGCTT
TGTGACAGAGATGGTAACAGATGGCCGTACTGCCTTGGCATTAGCTGAAAGAGAACCTTATGATTTTATTGTGTTAGATA
TTATGCTGCCGCAATTAGACGGTATCGAGGTCTGCAAAAGGCTTCGTGCTAAGGGAAGCAAAACCCCAATTATGATGGTT
TCTGCTAAAAGTGATGAATTTGACAAGGTTTTGGCTTTGGAACTGGGGGCAGATGATTATGTGACCAAGCCCTTTAGTCC
TAGAGAATTATTAGCGCGTGTCAAGGCTATTTTAAGGCGTACTGAAGCAGAGATTTCTGGTGATGGTGAGGAGCGTCGTG
AGCCTTTTTATACGATGAGTCAATTGCGTCTGTACCCAGAGCGACATGAGGTCTATAAGGACAAGGAGCTATTGCCATTA
ACCCCAAAGGAATATGAGCTACTGCTCTATCTCATGAAGCACCCTAATATGACCTTGACGCGTGAGCGGCTATTAGAGCG
TATCTGGGGTTATGACTTTGGCCAAGAAACACGTCTGGTAGACGTTCATATTGGCAAGCTCAGAGAAAAAATTGAGGACA
ATCCTAAGGCGCCTCAGTATATTCAAACCATTCGCGGCTATGGCTACAAATTTAAGGAGCTAAAGAATGATAGGACATCT
TAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(158-231)

Response regulator receiver domain (Response_reg)

(5-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

52.155

96.667

0.504
  micA Streptococcus pneumoniae Cp1015

50

95.833

0.479
  covR Lactococcus lactis subsp. lactis strain DGCC12653

43.59

97.5

0.425
  covR Streptococcus salivarius strain HSISS4

40.343

97.083

0.392

Multiple sequence alignment