Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   DQL11_RS01445 Genome accession   NZ_LS483315
Coordinates   264359..265861 (+) Length   500 a.a.
NCBI ID   WP_009880667.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12059     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 259359..270861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL11_RS01430 (NCTC12059_00286) - 259412..260593 (-) 1182 WP_111704521.1 D-alanyl-D-alanine carboxypeptidase family protein -
  DQL11_RS01435 (NCTC12059_00287) pbp3 260761..261993 (-) 1233 WP_002992223.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  DQL11_RS01440 (NCTC12059_00288) amiA 262324..264294 (+) 1971 WP_047235658.1 peptide ABC transporter substrate-binding protein Regulator
  DQL11_RS01445 (NCTC12059_00289) amiC 264359..265861 (+) 1503 WP_009880667.1 ABC transporter permease Regulator
  DQL11_RS01450 (NCTC12059_00290) amiD 265861..266787 (+) 927 WP_002986004.1 oligopeptide ABC transporter permease OppC Regulator
  DQL11_RS01455 (NCTC12059_00291) amiE 266796..267866 (+) 1071 WP_111704522.1 ABC transporter ATP-binding protein Regulator
  DQL11_RS01460 (NCTC12059_00292) amiF 267859..268782 (+) 924 WP_002986000.1 ABC transporter ATP-binding protein Regulator
  DQL11_RS09480 - 268820..268909 (-) 90 WP_110002794.1 IS3 family transposase -
  DQL11_RS09255 - 268930..269109 (-) 180 WP_197708786.1 transposase -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 56135.49 Da        Isoelectric Point: 10.2222

>NTDB_id=1136050 DQL11_RS01445 WP_009880667.1 264359..265861(+) (amiC) [Streptococcus pyogenes strain NCTC12059]
MKKYILNRIMRSLVSVVLVTALTYTIVYTLVPTSLIFKQDPNYNKMTTTPDKKVAYENLTFQRMGYVNYFSSKELKDNAS
KVDSSVTTEATSANKAVYEKYIDSLGNGWQLKRFPTSKQFYAIRNIPIYERVWNFFSNLVVIDHPWKIQDKDNPKLARYI
RLEKDKSVGWSLVGSGTKHKYLLYTNGKFPYLHQNFVTLNLGTSYPTYSNIPVLQVISQGQGRTALQDVTFPSGVTKKSS
VDIYSRSYKNPKSLDDITKVNYGKGDSYTKTINNYVDPSMIHNSFVIGFFGVMFSYIVGLPLGLFMARFKNTYFDRFSTA
TMTFMLALPSIAVIYVVRFLGGMVGLPDSFPMLGASDPKSYILPALILGILNIPTTVIWFRRYLVDLQASDWVRFARSKG
LSESEIYRGHLFKNAMVPIVSGVPASIILAIGGATLTETVFAFPGMGKMLIDSIKSANNSMIVGLTFIFTVLSIVSLLLG
DIVMTLVDPRIKLSTKKGGK

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=1136050 DQL11_RS01445 WP_009880667.1 264359..265861(+) (amiC) [Streptococcus pyogenes strain NCTC12059]
ATGAAAAAATACATTTTAAACCGTATCATGCGATCGTTAGTGTCGGTAGTTTTGGTAACGGCTTTAACATACACCATCGT
ATATACTCTAGTACCTACCAGCCTTATCTTTAAACAAGACCCTAATTATAATAAAATGACAACAACACCAGATAAAAAAG
TAGCGTATGAAAATCTAACTTTTCAACGTATGGGTTATGTCAATTATTTTTCAAGCAAAGAATTAAAAGATAATGCTTCT
AAAGTAGATAGTAGTGTAACGACAGAAGCAACTAGTGCTAACAAAGCTGTCTATGAGAAGTATATTGATTCTCTTGGCAA
TGGCTGGCAGCTAAAACGCTTCCCCACTAGCAAACAGTTTTATGCAATTCGCAATATTCCTATTTACGAACGTGTTTGGA
ACTTTTTCTCAAATCTAGTTGTTATTGATCACCCTTGGAAGATTCAGGATAAAGATAATCCAAAATTAGCTAGGTATATT
CGTCTAGAAAAAGATAAATCAGTTGGCTGGTCACTTGTTGGTTCGGGGACAAAACATAAATATCTCCTCTATACTAACGG
AAAATTTCCTTATCTTCACCAAAACTTTGTTACCCTAAACTTAGGAACATCTTATCCAACATACAGCAATATTCCTGTTC
TTCAGGTTATTTCACAAGGGCAAGGACGAACAGCTCTTCAAGATGTGACCTTCCCATCAGGTGTCACTAAGAAATCGTCA
GTGGATATCTATAGCCGTAGCTACAAAAATCCAAAATCATTGGATGATATCACCAAGGTAAACTATGGTAAGGGAGATTC
CTACACTAAAACCATCAATAATTATGTCGACCCATCAATGATTCACAATTCTTTTGTAATTGGTTTTTTTGGTGTTATGT
TTTCCTATATCGTTGGTTTGCCTCTTGGTTTATTTATGGCTCGGTTTAAAAATACCTATTTTGACCGTTTCTCAACAGCG
ACCATGACCTTCATGCTTGCTTTACCAAGTATTGCTGTTATCTATGTTGTTCGCTTCCTAGGTGGCATGGTTGGTTTACC
AGATAGTTTCCCAATGCTGGGGGCATCTGATCCTAAATCTTATATTTTACCAGCCCTTATTTTAGGAATTTTAAATATTC
CAACTACGGTTATCTGGTTCCGTCGCTATCTTGTTGACCTTCAGGCCAGCGATTGGGTACGTTTTGCGCGTTCAAAAGGA
TTATCAGAATCTGAAATTTACAGAGGGCATCTCTTCAAAAATGCCATGGTCCCAATTGTGTCAGGGGTTCCTGCAAGTAT
TATCCTTGCTATTGGTGGTGCAACCTTAACAGAGACTGTCTTTGCCTTCCCGGGTATGGGTAAAATGTTAATTGATTCTA
TTAAATCTGCTAACAATTCTATGATTGTTGGATTAACCTTTATCTTCACTGTCTTGTCAATTGTTTCACTTTTACTAGGA
GATATTGTCATGACCCTTGTCGATCCACGTATTAAATTGTCAACAAAAAAAGGGGGTAAGTAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

59.4

100

0.594
  amiC Streptococcus thermophilus LMD-9

59.4

100

0.594
  amiC Streptococcus thermophilus LMG 18311

59

100

0.59

Multiple sequence alignment