Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   DQL11_RS01455 Genome accession   NZ_LS483315
Coordinates   266796..267866 (+) Length   356 a.a.
NCBI ID   WP_111704522.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12059     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 261796..272866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL11_RS01440 (NCTC12059_00288) amiA 262324..264294 (+) 1971 WP_047235658.1 peptide ABC transporter substrate-binding protein Regulator
  DQL11_RS01445 (NCTC12059_00289) amiC 264359..265861 (+) 1503 WP_009880667.1 ABC transporter permease Regulator
  DQL11_RS01450 (NCTC12059_00290) amiD 265861..266787 (+) 927 WP_002986004.1 oligopeptide ABC transporter permease OppC Regulator
  DQL11_RS01455 (NCTC12059_00291) amiE 266796..267866 (+) 1071 WP_111704522.1 ABC transporter ATP-binding protein Regulator
  DQL11_RS01460 (NCTC12059_00292) amiF 267859..268782 (+) 924 WP_002986000.1 ABC transporter ATP-binding protein Regulator
  DQL11_RS09480 - 268820..268909 (-) 90 WP_110002794.1 IS3 family transposase -
  DQL11_RS09255 - 268930..269109 (-) 180 WP_197708786.1 transposase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 39749.80 Da        Isoelectric Point: 5.6707

>NTDB_id=1136052 DQL11_RS01455 WP_111704522.1 266796..267866(+) (amiE) [Streptococcus pyogenes strain NCTC12059]
MTKENNVILTAKDVVVEFDVRDRVLTAIRNVSLELVEGEVLAFVGESGSGKSVLTKTFTGMLESNGRIANGSIVYRGQEL
TDLKTNKEWSKIRGSKIATIFQDPMTSLSPIKTIGSQITEVIIKHQKVSHAKAKEMALDYMNKVGIPNTKKRFEDYPFEY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIVELLKSLQREYHFTIIFITHDLGVVASIADKVAVMYAGEIVE
FGTVEEIFYDPRHPYTWSLLSSLPQLADESGELYAIPGTPPSLYSPIIGDAFALRSEYAMVLDFEKAPPAINVSETHWAK
TWLLHPEAPKVQKPEVIQDLHQKILRKMSQQEEGNV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1136052 DQL11_RS01455 WP_111704522.1 266796..267866(+) (amiE) [Streptococcus pyogenes strain NCTC12059]
ATGACAAAAGAAAATAATGTAATCTTAACTGCCAAAGATGTGGTGGTAGAATTTGATGTGCGTGATCGTGTTTTAACAGC
TATCCGTAACGTCTCACTGGAACTTGTTGAAGGAGAAGTCCTTGCTTTTGTAGGGGAATCAGGCTCAGGTAAATCTGTTT
TAACAAAGACCTTTACAGGGATGTTGGAGTCTAATGGACGCATTGCTAATGGTTCAATTGTCTATCGTGGGCAAGAATTG
ACAGATTTAAAAACAAATAAAGAGTGGTCAAAGATTCGCGGCTCAAAAATCGCAACGATTTTCCAAGACCCAATGACCAG
TCTTAGTCCCATTAAAACTATTGGTAGCCAAATCACAGAAGTGATTATTAAGCACCAAAAAGTAAGTCATGCCAAAGCTA
AAGAAATGGCCCTTGATTACATGAATAAAGTGGGTATCCCAAATACCAAAAAACGCTTTGAAGATTACCCATTTGAGTAT
TCAGGAGGAATGCGTCAACGTATTGTTATCGCTATTGCTTTAGCTTGTCGCCCAGATATTCTTATCTGTGATGAGCCAAC
AACAGCCCTTGATGTGACTATTCAAGCTCAAATCGTTGAGTTATTGAAGTCGCTTCAACGAGAATATCATTTCACCATTA
TCTTTATTACGCACGATTTAGGTGTTGTGGCAAGCATTGCAGATAAAGTGGCTGTCATGTATGCAGGAGAAATTGTTGAA
TTTGGAACAGTCGAAGAGATTTTCTATGATCCAAGACACCCCTATACATGGAGTTTGCTGTCTAGCTTACCGCAGTTGGC
AGATGAATCTGGTGAACTTTACGCTATTCCAGGAACGCCTCCATCACTTTATTCACCAATTATCGGAGATGCCTTTGCAC
TTCGCTCAGAATATGCTATGGTTTTAGACTTTGAAAAAGCACCTCCGGCGATTAACGTATCTGAGACTCATTGGGCCAAA
ACATGGCTTTTACACCCAGAGGCTCCAAAAGTTCAAAAACCAGAAGTCATTCAAGATTTGCATCAAAAAATCTTAAGGAA
AATGTCACAACAGGAGGAAGGAAATGTCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

76.111

100

0.77
  amiE Streptococcus thermophilus LMG 18311

75

100

0.758
  amiE Streptococcus thermophilus LMD-9

75

100

0.758
  oppD Streptococcus mutans UA159

56.38

94.663

0.534

Multiple sequence alignment