Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | O987_RS27285 | Genome accession | NZ_CP006704 |
| Coordinates | 6015746..6016294 (-) | Length | 182 a.a. |
| NCBI ID | WP_043375927.1 | Uniprot ID | A0A076Q204 |
| Organism | Comamonas testosteroni TK102 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 5974540..6015608 | 6015746..6016294 | flank | 138 |
Gene organization within MGE regions
Location: 5974540..6016294
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| O987_RS27120 (O987_28135) | - | 5974802..5975956 (-) | 1155 | WP_051962269.1 | caspase family protein | - |
| O987_RS27125 (O987_28140) | - | 5975953..5978445 (-) | 2493 | WP_235214228.1 | hypothetical protein | - |
| O987_RS27130 (O987_28145) | - | 5978445..5979296 (-) | 852 | WP_043375874.1 | hypothetical protein | - |
| O987_RS29000 | - | 5979293..5980084 (-) | 792 | WP_158407689.1 | TRAFAC clade GTPase domain-containing protein | - |
| O987_RS27135 (O987_28150) | - | 5980261..5981550 (-) | 1290 | WP_043375876.1 | GTPase-associated system all-helical protein GASH | - |
| O987_RS27140 (O987_28155) | - | 5981864..5983615 (+) | 1752 | WP_051962270.1 | ATP-dependent nuclease | - |
| O987_RS27145 (O987_28160) | - | 5983596..5985338 (+) | 1743 | WP_043375878.1 | UvrD-helicase domain-containing protein | - |
| O987_RS27150 (O987_28165) | - | 5985650..5985970 (+) | 321 | WP_043375880.1 | hypothetical protein | - |
| O987_RS28560 | - | 5986302..5987351 (+) | 1050 | WP_080731621.1 | Fic family protein | - |
| O987_RS27160 (O987_28175) | - | 5987815..5988603 (+) | 789 | WP_043375882.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| O987_RS27165 (O987_28185) | - | 5988618..5990075 (+) | 1458 | WP_043375884.1 | aldehyde dehydrogenase family protein | - |
| O987_RS27170 (O987_28190) | - | 5990159..5991133 (-) | 975 | WP_043375886.1 | PDR/VanB family oxidoreductase | - |
| O987_RS27175 (O987_28195) | - | 5991177..5991953 (-) | 777 | WP_043375888.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| O987_RS27180 (O987_28200) | - | 5991969..5993243 (-) | 1275 | WP_043375890.1 | aromatic ring-hydroxylating dioxygenase subunit alpha | - |
| O987_RS27185 (O987_28205) | - | 5993391..5994143 (+) | 753 | WP_043375892.1 | IclR family transcriptional regulator | - |
| O987_RS27190 (O987_28210) | - | 5994192..5995169 (-) | 978 | WP_043375894.1 | Bug family tripartite tricarboxylate transporter substrate binding protein | - |
| O987_RS27195 (O987_28215) | - | 5995245..5996216 (-) | 972 | WP_043375896.1 | Bug family tripartite tricarboxylate transporter substrate binding protein | - |
| O987_RS29630 (O987_28220) | - | 5996535..5997455 (-) | 921 | WP_043375898.1 | LysR family transcriptional regulator | - |
| O987_RS27205 (O987_28230) | - | 5997547..5998680 (+) | 1134 | WP_043375899.1 | mandelate racemase/muconate lactonizing enzyme family protein | - |
| O987_RS27210 (O987_28235) | - | 5998677..5999693 (+) | 1017 | WP_080731622.1 | Bug family tripartite tricarboxylate transporter substrate binding protein | - |
| O987_RS27215 (O987_28240) | mdlC | 5999739..6001310 (+) | 1572 | WP_043375905.1 | benzoylformate decarboxylase | - |
| O987_RS28570 (O987_28245) | - | 6001310..6002476 (+) | 1167 | WP_080731623.1 | alpha-hydroxy acid oxidase | - |
| O987_RS27225 (O987_28250) | - | 6002576..6003148 (-) | 573 | WP_326998631.1 | HAD domain-containing protein | - |
| O987_RS27230 (O987_28255) | - | 6003179..6003736 (-) | 558 | WP_043375909.1 | HAD domain-containing protein | - |
| O987_RS27235 (O987_28260) | - | 6003733..6004320 (-) | 588 | WP_144244982.1 | HAD domain-containing protein | - |
| O987_RS29740 (O987_28270) | - | 6005032..6005280 (+) | 249 | WP_043375916.1 | helix-turn-helix domain-containing protein | - |
| O987_RS27250 (O987_28275) | - | 6005686..6006699 (-) | 1014 | WP_043375918.1 | hypothetical protein | - |
| O987_RS27255 (O987_28280) | - | 6007063..6008829 (-) | 1767 | WP_158407690.1 | AAA family ATPase | - |
| O987_RS27260 (O987_28285) | - | 6008914..6010047 (-) | 1134 | WP_158407691.1 | dsDNA nuclease domain-containing protein | - |
| O987_RS27265 (O987_28290) | - | 6010384..6010815 (-) | 432 | WP_043375924.1 | hypothetical protein | - |
| O987_RS27270 (O987_28295) | - | 6010812..6012824 (-) | 2013 | WP_043375926.1 | integrase | - |
| O987_RS27275 (O987_28300) | - | 6012821..6014368 (-) | 1548 | WP_051962276.1 | tyrosine-type recombinase/integrase | - |
| O987_RS27280 (O987_28305) | - | 6014349..6015608 (-) | 1260 | WP_051962277.1 | tyrosine-type recombinase/integrase | - |
| O987_RS27285 (O987_28310) | ssb | 6015746..6016294 (-) | 549 | WP_043375927.1 | single-stranded DNA-binding protein | Machinery gene |
Sequence
Protein
Download Length: 182 a.a. Molecular weight: 19886.04 Da Isoelectric Point: 5.9442
>NTDB_id=113605 O987_RS27285 WP_043375927.1 6015746..6016294(-) (ssb) [Comamonas testosteroni TK102]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDRWRDKNTGENREATEWHRVVFNGKLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQASGQERYATEIRADTMQMLGSRQGGGQQQGGYGGDDGYGESSCQAPSRPAPAPMQQRPAPAPMQQRSAPA
PMAPPPQRAASGFDDMDDDIPF
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDRWRDKNTGENREATEWHRVVFNGKLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQASGQERYATEIRADTMQMLGSRQGGGQQQGGYGGDDGYGESSCQAPSRPAPAPMQQRPAPAPMQQRSAPA
PMAPPPQRAASGFDDMDDDIPF
Nucleotide
Download Length: 549 bp
>NTDB_id=113605 O987_RS27285 WP_043375927.1 6015746..6016294(-) (ssb) [Comamonas testosteroni TK102]
ATGGCATCCGTCAACAAAGTCATCATCGTCGGCAATCTGGGTCGTGACCCCGAAATGCGTACCTTCCCCAGCGGCGATCA
GGTGGCCAATGTGACCATCGCCACCACGGACCGCTGGCGCGACAAGAACACCGGTGAAAACCGCGAAGCCACCGAATGGC
ACCGCGTGGTCTTCAACGGCAAGCTGGCCGAAATCGTGGGGCAGTATCTGCGCAAGGGCAGCCAGGTCTATGTGGAAGGC
AGCCTGCGCACCCGCAAATGGACCGATCAGGCCTCCGGCCAAGAGCGTTACGCTACCGAAATCCGCGCCGACACCATGCA
GATGCTGGGTAGCCGCCAGGGCGGCGGTCAGCAGCAAGGCGGCTACGGTGGTGACGATGGCTATGGTGAAAGCAGCTGTC
AGGCGCCCAGCCGTCCAGCTCCCGCGCCCATGCAGCAGCGCCCCGCACCGGCACCCATGCAGCAGCGTTCTGCTCCCGCT
CCCATGGCTCCTCCTCCCCAGCGCGCTGCGTCGGGGTTTGACGACATGGACGACGACATTCCCTTCTAA
ATGGCATCCGTCAACAAAGTCATCATCGTCGGCAATCTGGGTCGTGACCCCGAAATGCGTACCTTCCCCAGCGGCGATCA
GGTGGCCAATGTGACCATCGCCACCACGGACCGCTGGCGCGACAAGAACACCGGTGAAAACCGCGAAGCCACCGAATGGC
ACCGCGTGGTCTTCAACGGCAAGCTGGCCGAAATCGTGGGGCAGTATCTGCGCAAGGGCAGCCAGGTCTATGTGGAAGGC
AGCCTGCGCACCCGCAAATGGACCGATCAGGCCTCCGGCCAAGAGCGTTACGCTACCGAAATCCGCGCCGACACCATGCA
GATGCTGGGTAGCCGCCAGGGCGGCGGTCAGCAGCAAGGCGGCTACGGTGGTGACGATGGCTATGGTGAAAGCAGCTGTC
AGGCGCCCAGCCGTCCAGCTCCCGCGCCCATGCAGCAGCGCCCCGCACCGGCACCCATGCAGCAGCGTTCTGCTCCCGCT
CCCATGGCTCCTCCTCCCCAGCGCGCTGCGTCGGGGTTTGACGACATGGACGACGACATTCCCTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
55.729 |
100 |
0.588 |
| ssb | Glaesserella parasuis strain SC1401 |
50.515 |
100 |
0.538 |
| ssb | Neisseria gonorrhoeae MS11 |
47.514 |
99.451 |
0.473 |
| ssb | Neisseria meningitidis MC58 |
46.409 |
99.451 |
0.462 |