Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DQL83_RS02030 Genome accession   NZ_LS483311
Coordinates   403941..404444 (+) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A7U7IE99
Organism   Staphylococcus aureus strain NCTC6136     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 403941..424573 403941..404444 within 0


Gene organization within MGE regions


Location: 403941..424573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL83_RS02030 (NCTC6136_00374) ssbA 403941..404444 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  DQL83_RS02035 (NCTC6136_00375) rpsR 404496..404738 (+) 243 WP_000897044.1 30S ribosomal protein S18 -
  DQL83_RS02040 (NCTC6136_00376) - 404977..405876 (-) 900 WP_001797289.1 Abi family protein -
  DQL83_RS02045 (NCTC6136_00377) - 405878..407092 (-) 1215 WP_111724373.1 tyrosine-type recombinase/integrase -
  DQL83_RS02050 (NCTC6136_00379) - 407371..408066 (-) 696 WP_031903008.1 helix-turn-helix domain-containing protein -
  DQL83_RS02055 (NCTC6136_00380) - 408211..408423 (+) 213 WP_000608987.1 helix-turn-helix transcriptional regulator -
  DQL83_RS02060 (NCTC6136_00381) - 408456..408728 (+) 273 WP_031903009.1 helix-turn-helix domain-containing protein -
  DQL83_RS02065 (NCTC6136_00382) - 408740..408886 (+) 147 WP_000784875.1 hypothetical protein -
  DQL83_RS02070 (NCTC6136_00383) tscA 408879..409088 (+) 210 WP_001058486.1 type II toxin-antitoxin system antitoxin TscA -
  DQL83_RS02075 (NCTC6136_00384) tscT 409091..409390 (+) 300 WP_111724374.1 type II toxin-antitoxin system toxin TscT -
  DQL83_RS02080 (NCTC6136_00385) - 409465..411081 (+) 1617 WP_111724375.1 phage resistance protein -
  DQL83_RS02085 (NCTC6136_00386) - 411257..412060 (+) 804 WP_111724376.1 bifunctional DNA primase/polymerase -
  DQL83_RS02090 (NCTC6136_00387) - 412047..412319 (+) 273 WP_111724377.1 pathogenicity island protein -
  DQL83_RS02095 (NCTC6136_00388) - 412321..412962 (+) 642 WP_111724378.1 pathogenicity island protein -
  DQL83_RS02100 (NCTC6136_00389) - 413406..413750 (+) 345 WP_001288441.1 hypothetical protein -
  DQL83_RS02105 (NCTC6136_00390) - 413785..414363 (+) 579 WP_031769358.1 hypothetical protein -
  DQL83_RS15060 (NCTC6136_00391) - 414363..414539 (+) 177 WP_001160678.1 hypothetical protein -
  DQL83_RS02110 (NCTC6136_00392) - 414592..415119 (+) 528 WP_031765331.1 spore coat protein -
  DQL83_RS02115 - 415251..415463 (+) 213 WP_111724451.1 pathogenicity island family protein -
  DQL83_RS02120 (NCTC6136_00394) - 415460..415975 (+) 516 WP_111724379.1 terminase small subunit -
  DQL83_RS02125 (NCTC6136_00395) - 416193..416525 (+) 333 WP_111724380.1 hypothetical protein -
  DQL83_RS02130 (NCTC6136_00396) - 416600..417280 (+) 681 WP_145959531.1 hypothetical protein -
  DQL83_RS02140 (NCTC6136_00398) - 418165..418719 (-) 555 WP_063636416.1 DUF4888 domain-containing protein -
  DQL83_RS02150 (NCTC6136_00399) - 419715..420653 (-) 939 WP_001817700.1 Abi family protein -
  DQL83_RS15065 - 420692..421392 (-) 701 Protein_407 tyrosine-type recombinase/integrase -
  DQL83_RS02165 (NCTC6136_00401) selX 421528..422139 (+) 612 WP_000473141.1 staphylococcal enterotoxin-like toxin X -
  DQL83_RS02170 (NCTC6136_00402) - 422508..422876 (+) 369 WP_000849167.1 YxeA family protein -
  DQL83_RS02175 (NCTC6136_00403) - 423055..423627 (+) 573 WP_000769722.1 PepSY domain-containing protein -
  DQL83_RS02180 (NCTC6136_00404) - 423765..424028 (-) 264 WP_001055897.1 helix-turn-helix domain-containing protein -
  DQL83_RS02185 (NCTC6136_00405) - 424322..424573 (+) 252 WP_000466739.1 GlsB/YeaQ/YmgE family stress response membrane protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=1135890 DQL83_RS02030 WP_000934799.1 403941..404444(+) (ssbA) [Staphylococcus aureus strain NCTC6136]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=1135890 DQL83_RS02030 WP_000934799.1 403941..404444(+) (ssbA) [Staphylococcus aureus strain NCTC6136]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTATGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IE99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365

Multiple sequence alignment