Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | D934_RS11420 | Genome accession | NZ_CP006696 |
| Coordinates | 2443039..2443485 (+) | Length | 148 a.a. |
| NCBI ID | WP_020852950.1 | Uniprot ID | A0A060H1M4 |
| Organism | Xylella fastidiosa subsp. sandyi Ann-1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2428131..2468690 | 2443039..2443485 | within | 0 |
Gene organization within MGE regions
Location: 2428131..2468690
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D934_RS11295 (D934_12135) | - | 2428131..2428646 (-) | 516 | WP_020852292.1 | phage portal protein | - |
| D934_RS15355 (D934_12140) | - | 2428643..2428879 (-) | 237 | WP_024749052.1 | hypothetical protein | - |
| D934_RS11305 (D934_12145) | - | 2428956..2431055 (-) | 2100 | WP_042836615.1 | phage terminase large subunit family protein | - |
| D934_RS11310 (D934_12150) | - | 2431052..2431651 (-) | 600 | WP_020853062.1 | hypothetical protein | - |
| D934_RS11320 (D934_12160) | - | 2432048..2433553 (-) | 1506 | WP_042836619.1 | VapE domain-containing protein | - |
| D934_RS11325 (D934_12165) | - | 2433550..2434605 (-) | 1056 | WP_042836620.1 | DNA primase | - |
| D934_RS11330 (D934_12170) | - | 2434604..2435005 (+) | 402 | WP_024748708.1 | hypothetical protein | - |
| D934_RS11335 (D934_12175) | - | 2435107..2435730 (-) | 624 | WP_020852705.1 | hypothetical protein | - |
| D934_RS11340 (D934_12180) | - | 2435788..2436138 (-) | 351 | WP_042836623.1 | hypothetical protein | - |
| D934_RS11345 (D934_12185) | - | 2436125..2436421 (-) | 297 | WP_042836624.1 | transcriptional regulator | - |
| D934_RS11350 (D934_12190) | - | 2436498..2436929 (+) | 432 | WP_004086786.1 | hypothetical protein | - |
| D934_RS11355 (D934_12195) | - | 2437044..2437511 (+) | 468 | WP_042836716.1 | hypothetical protein | - |
| D934_RS11360 (D934_12200) | - | 2437717..2438025 (-) | 309 | WP_051604013.1 | hypothetical protein | - |
| D934_RS11365 (D934_12205) | - | 2438064..2438342 (-) | 279 | WP_230577808.1 | hypothetical protein | - |
| D934_RS11370 (D934_12210) | - | 2438528..2438926 (+) | 399 | WP_042836626.1 | hypothetical protein | - |
| D934_RS11375 (D934_12215) | - | 2439160..2439648 (-) | 489 | WP_020853051.1 | hypothetical protein | - |
| D934_RS15545 | - | 2439642..2439764 (+) | 123 | WP_267959251.1 | hypothetical protein | - |
| D934_RS15360 | - | 2439816..2440103 (+) | 288 | WP_020853052.1 | hypothetical protein | - |
| D934_RS11380 (D934_12225) | - | 2440087..2440566 (+) | 480 | WP_020853053.1 | DUF1566 domain-containing protein | - |
| D934_RS11385 (D934_12230) | - | 2440563..2441012 (+) | 450 | WP_020852697.1 | hypothetical protein | - |
| D934_RS11390 (D934_12235) | - | 2441009..2441230 (+) | 222 | WP_021358638.1 | hypothetical protein | - |
| D934_RS11395 (D934_12240) | - | 2441227..2441505 (+) | 279 | WP_020853056.1 | hypothetical protein | - |
| D934_RS11400 (D934_12245) | - | 2441502..2441768 (+) | 267 | WP_020853057.1 | hypothetical protein | - |
| D934_RS14875 | - | 2441761..2441922 (+) | 162 | WP_196242785.1 | hypothetical protein | - |
| D934_RS11405 (D934_12250) | - | 2441900..2442433 (+) | 534 | WP_020852695.1 | pilin | - |
| D934_RS15625 | - | 2442526..2442690 (+) | 165 | Protein_2289 | UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase | - |
| D934_RS11415 (D934_12260) | - | 2442849..2443055 (+) | 207 | WP_230577747.1 | hypothetical protein | - |
| D934_RS11420 (D934_12265) | ssb | 2443039..2443485 (+) | 447 | WP_020852950.1 | single-stranded DNA-binding protein | Machinery gene |
| D934_RS11425 (D934_12270) | - | 2443507..2443779 (+) | 273 | WP_020852746.1 | hypothetical protein | - |
| D934_RS11430 (D934_12275) | - | 2443779..2444918 (+) | 1140 | Protein_2293 | integrase | - |
| D934_RS11435 | - | 2445342..2445815 (+) | 474 | WP_020852945.1 | DUF488 domain-containing protein | - |
| D934_RS11440 (D934_12280) | - | 2445772..2446605 (-) | 834 | WP_020852944.1 | hypothetical protein | - |
| D934_RS11445 (D934_12290) | - | 2447164..2447712 (+) | 549 | WP_024749081.1 | type II toxin-antitoxin system antitoxin SocA domain-containing protein | - |
| D934_RS11450 (D934_12295) | - | 2447672..2448268 (+) | 597 | WP_024749080.1 | hypothetical protein | - |
| D934_RS11455 (D934_12300) | - | 2448285..2448509 (+) | 225 | WP_230577809.1 | hypothetical protein | - |
| D934_RS11460 (D934_12305) | - | 2448510..2449673 (-) | 1164 | WP_020851649.1 | tail fiber protein | - |
| D934_RS11465 (D934_12310) | - | 2449677..2450237 (-) | 561 | WP_020851650.1 | DUF2612 domain-containing protein | - |
| D934_RS11470 (D934_12315) | - | 2450234..2451379 (-) | 1146 | WP_020851651.1 | baseplate J/gp47 family protein | - |
| D934_RS11475 (D934_12320) | - | 2451478..2451774 (+) | 297 | WP_004089252.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| D934_RS11480 (D934_12325) | - | 2451778..2452083 (+) | 306 | WP_004089254.1 | addiction module antidote protein | - |
| D934_RS11485 (D934_12330) | - | 2452094..2452447 (-) | 354 | WP_020851652.1 | hypothetical protein | - |
| D934_RS11490 (D934_12335) | - | 2452444..2453085 (-) | 642 | WP_020851653.1 | Gp138 family membrane-puncturing spike protein | - |
| D934_RS11495 (D934_12340) | - | 2453082..2453912 (-) | 831 | WP_042836628.1 | hypothetical protein | - |
| D934_RS11500 (D934_12345) | - | 2453909..2454226 (-) | 318 | WP_020851655.1 | hypothetical protein | - |
| D934_RS11505 (D934_12350) | - | 2454226..2454996 (-) | 771 | WP_024749165.1 | phage baseplate protein | - |
| D934_RS11510 (D934_12355) | - | 2455054..2455380 (+) | 327 | WP_004091353.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| D934_RS11515 (D934_12360) | - | 2455377..2455658 (+) | 282 | WP_004091355.1 | XRE family transcriptional regulator | - |
| D934_RS14555 (D934_12365) | - | 2455717..2456010 (-) | 294 | Protein_2311 | hypothetical protein | - |
| D934_RS11520 (D934_12370) | - | 2456012..2456233 (-) | 222 | Protein_2312 | phage baseplate protein | - |
| D934_RS11525 (D934_12375) | - | 2456321..2456620 (+) | 300 | WP_024749166.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| D934_RS11530 (D934_12380) | - | 2456624..2456932 (+) | 309 | WP_004085003.1 | addiction module antidote protein | - |
| D934_RS11535 (D934_12385) | - | 2457006..2458895 (-) | 1890 | WP_042836631.1 | hypothetical protein | - |
| D934_RS11540 (D934_12390) | - | 2459043..2459465 (-) | 423 | WP_020852390.1 | phage tail assembly chaperone | - |
| D934_RS11545 (D934_12395) | - | 2459462..2459899 (-) | 438 | WP_004087249.1 | phage protein | - |
| D934_RS14090 (D934_12400) | - | 2459909..2460136 (-) | 228 | WP_080702514.1 | DUF3383 family protein | - |
| D934_RS11550 (D934_12405) | - | 2460362..2461231 (-) | 870 | WP_020851662.1 | RNA-guided endonuclease TnpB family protein | - |
| D934_RS15370 (D934_12410) | - | 2461210..2461518 (-) | 309 | WP_020851663.1 | helix-turn-helix domain-containing protein | - |
| D934_RS11555 | - | 2461550..2462167 (-) | 618 | Protein_2321 | IS607 family transposase | - |
| D934_RS11560 (D934_12425) | - | 2462239..2462838 (+) | 600 | WP_020851666.1 | hypothetical protein | - |
| D934_RS11565 (D934_12430) | - | 2462835..2463113 (+) | 279 | WP_020851667.1 | VRR-NUC domain-containing protein | - |
| D934_RS15375 (D934_12435) | - | 2463115..2463405 (-) | 291 | WP_038274391.1 | hypothetical protein | - |
| D934_RS11575 (D934_12440) | - | 2463475..2463921 (-) | 447 | WP_024749168.1 | hypothetical protein | - |
| D934_RS11580 (D934_12445) | - | 2464006..2465424 (+) | 1419 | WP_020852570.1 | DEAD/DEAH box helicase | - |
| D934_RS14100 (D934_12450) | - | 2465421..2465666 (+) | 246 | WP_080702516.1 | DUF4224 domain-containing protein | - |
| D934_RS11585 (D934_12455) | - | 2465666..2466685 (+) | 1020 | WP_020852569.1 | tyrosine-type recombinase/integrase | - |
| D934_RS11590 (D934_12460) | - | 2466753..2468690 (-) | 1938 | WP_020852568.1 | ABC-F family ATP-binding cassette domain-containing protein | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 16605.49 Da Isoelectric Point: 7.3543
>NTDB_id=113587 D934_RS11420 WP_020852950.1 2443039..2443485(+) (ssb) [Xylella fastidiosa subsp. sandyi Ann-1]
MARGINKVILVGNLGNEPDIKYTQSGMTITNISLATSSKRKDREGNTQERTEWHRVKFFGKLGEIAAEYLHKGSQCYIEG
TIRYDKFTGNDGQDRYVTEIIANQMHMLGGRGEGSSGITPQQRPAKVRNNDKAYAYAGDDFHDDDIPF
MARGINKVILVGNLGNEPDIKYTQSGMTITNISLATSSKRKDREGNTQERTEWHRVKFFGKLGEIAAEYLHKGSQCYIEG
TIRYDKFTGNDGQDRYVTEIIANQMHMLGGRGEGSSGITPQQRPAKVRNNDKAYAYAGDDFHDDDIPF
Nucleotide
Download Length: 447 bp
>NTDB_id=113587 D934_RS11420 WP_020852950.1 2443039..2443485(+) (ssb) [Xylella fastidiosa subsp. sandyi Ann-1]
ATGGCACGCGGAATTAACAAGGTAATCCTAGTCGGCAACCTGGGGAACGAGCCGGATATCAAATACACCCAAAGCGGCAT
GACGATCACCAACATTAGCCTAGCAACCAGCAGCAAACGCAAGGACAGAGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACCGCGTCAAGTTTTTCGGAAAGCTGGGCGAGATTGCCGCCGAATATCTGCACAAGGGATCGCAGTGCTACATAGAGGGC
ACCATCCGTTACGACAAATTCACCGGCAATGATGGGCAGGACCGTTATGTCACTGAGATTATTGCTAACCAAATGCACAT
GCTCGGCGGTCGCGGTGAAGGCTCCAGCGGCATCACGCCACAGCAGCGACCGGCAAAGGTCCGTAACAACGATAAAGCCT
ATGCGTATGCAGGCGACGACTTCCACGATGACGACATCCCGTTTTAG
ATGGCACGCGGAATTAACAAGGTAATCCTAGTCGGCAACCTGGGGAACGAGCCGGATATCAAATACACCCAAAGCGGCAT
GACGATCACCAACATTAGCCTAGCAACCAGCAGCAAACGCAAGGACAGAGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACCGCGTCAAGTTTTTCGGAAAGCTGGGCGAGATTGCCGCCGAATATCTGCACAAGGGATCGCAGTGCTACATAGAGGGC
ACCATCCGTTACGACAAATTCACCGGCAATGATGGGCAGGACCGTTATGTCACTGAGATTATTGCTAACCAAATGCACAT
GCTCGGCGGTCGCGGTGAAGGCTCCAGCGGCATCACGCCACAGCAGCGACCGGCAAAGGTCCGTAACAACGATAAAGCCT
ATGCGTATGCAGGCGACGACTTCCACGATGACGACATCCCGTTTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
42.045 |
100 |
0.5 |
| ssb | Neisseria meningitidis MC58 |
39.306 |
100 |
0.459 |
| ssb | Neisseria gonorrhoeae MS11 |
39.306 |
100 |
0.459 |
| ssb | Glaesserella parasuis strain SC1401 |
42.029 |
93.243 |
0.392 |