Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DQL09_RS08385 Genome accession   NZ_LS483307
Coordinates   1583377..1583868 (-) Length   163 a.a.
NCBI ID   WP_111677461.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC5163     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1578377..1588868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL09_RS08370 (NCTC5163_01682) - 1581109..1582053 (+) 945 WP_002983147.1 magnesium transporter CorA family protein -
  DQL09_RS08375 (NCTC5163_01683) - 1582186..1582842 (+) 657 WP_111677460.1 DUF1129 domain-containing protein -
  DQL09_RS08380 (NCTC5163_01684) rpsR 1582973..1583212 (-) 240 WP_002983142.1 30S ribosomal protein S18 -
  DQL09_RS08385 (NCTC5163_01685) ssbA 1583377..1583868 (-) 492 WP_111677461.1 single-stranded DNA-binding protein Machinery gene
  DQL09_RS08390 (NCTC5163_01686) rpsF 1583890..1584180 (-) 291 WP_063632424.1 30S ribosomal protein S6 -
  DQL09_RS08395 (NCTC5163_01687) - 1584353..1584646 (-) 294 WP_002983113.1 hypothetical protein -
  DQL09_RS08400 (NCTC5163_01688) mutY 1584814..1585968 (+) 1155 WP_002988276.1 A/G-specific adenine glycosylase -
  DQL09_RS08405 (NCTC5163_01689) - 1586044..1586637 (+) 594 WP_111677462.1 helix-turn-helix domain-containing protein -
  DQL09_RS08410 (NCTC5163_01690) trxA 1586689..1587021 (-) 333 WP_001932060.1 thioredoxin -
  DQL09_RS08415 (NCTC5163_01691) - 1587084..1587584 (-) 501 WP_172448848.1 phosphatase PAP2 family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18011.84 Da        Isoelectric Point: 4.8894

>NTDB_id=1135795 DQL09_RS08385 WP_111677461.1 1583377..1583868(-) (ssbA) [Streptococcus pyogenes strain NCTC5163]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQMPNFGRDDSPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=1135795 DQL09_RS08385 WP_111677461.1 1583377..1583868(-) (ssbA) [Streptococcus pyogenes strain NCTC5163]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTAGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCCTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAATGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.195

100

0.632
  ssb Latilactobacillus sakei subsp. sakei 23K

58.48

100

0.614
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

65.031

0.374
  ssbB/cilA Streptococcus pneumoniae TIGR4

54.128

66.871

0.362

Multiple sequence alignment