Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | D934_RS04270 | Genome accession | NZ_CP006696 |
| Coordinates | 1009344..1009838 (+) | Length | 164 a.a. |
| NCBI ID | WP_020850887.1 | Uniprot ID | A0A060H8M8 |
| Organism | Xylella fastidiosa subsp. sandyi Ann-1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1004344..1014838
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D934_RS04255 (D934_04615) | cyoB | 1004674..1006671 (-) | 1998 | WP_020850884.1 | cytochrome o ubiquinol oxidase subunit I | - |
| D934_RS04260 (D934_04620) | cyoA | 1006665..1007624 (-) | 960 | WP_020850885.1 | ubiquinol oxidase subunit II | - |
| D934_RS04265 (D934_04625) | - | 1008094..1009095 (-) | 1002 | WP_020850886.1 | polyprenyl synthetase family protein | - |
| D934_RS04270 (D934_04630) | ssb | 1009344..1009838 (+) | 495 | WP_020850887.1 | single-stranded DNA-binding protein | Machinery gene |
| D934_RS14700 (D934_04635) | - | 1010114..1010278 (+) | 165 | WP_196230095.1 | hypothetical protein | - |
| D934_RS04275 (D934_04640) | - | 1011488..1012399 (+) | 912 | WP_020850889.1 | class I SAM-dependent methyltransferase | - |
| D934_RS04280 (D934_04645) | - | 1012717..1013913 (+) | 1197 | WP_024749296.1 | cation:proton antiporter | - |
| D934_RS04285 (D934_04650) | gloA | 1014074..1014601 (-) | 528 | WP_020850891.1 | lactoylglutathione lyase | - |
Sequence
Protein
Download Length: 164 a.a. Molecular weight: 18241.23 Da Isoelectric Point: 5.9575
>NTDB_id=113578 D934_RS04270 WP_020850887.1 1009344..1009838(+) (ssb) [Xylella fastidiosa subsp. sandyi Ann-1]
MARGINKVILVGNLGNDPDIKYTQGGMTITTISLATTSVRKDKEGNTQERTEWHRVKFFGKLGEIAGEYLRKGSQCYIEG
SIRYDKFTGQDGQERYVTEIVADEMQMLGGRSDGGGMGGGGERPQRQTSQRQDYAPRRQTRQPSQSPQSSPPPMDDFADD
DIPF
MARGINKVILVGNLGNDPDIKYTQGGMTITTISLATTSVRKDKEGNTQERTEWHRVKFFGKLGEIAGEYLRKGSQCYIEG
SIRYDKFTGQDGQERYVTEIVADEMQMLGGRSDGGGMGGGGERPQRQTSQRQDYAPRRQTRQPSQSPQSSPPPMDDFADD
DIPF
Nucleotide
Download Length: 495 bp
>NTDB_id=113578 D934_RS04270 WP_020850887.1 1009344..1009838(+) (ssb) [Xylella fastidiosa subsp. sandyi Ann-1]
ATGGCCCGTGGTATCAATAAAGTCATCCTCGTCGGTAATCTCGGTAACGATCCGGATATCAAATACACCCAAGGTGGTAT
GACGATCACTACCATCAGCTTGGCGACAACCAGTGTTCGTAAGGACAAGGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACAGGGTCAAGTTTTTCGGAAAACTCGGTGAGATTGCCGGGGAATATCTACGTAAGGGATCACAGTGCTATATCGAAGGG
AGCATTCGCTATGACAAGTTCACTGGCCAGGATGGTCAGGAGCGCTATGTTACAGAGATTGTTGCTGATGAGATGCAAAT
GTTGGGTGGCCGTAGTGATGGTGGCGGTATGGGCGGGGGCGGTGAGCGCCCACAGCGTCAAACATCGCAGCGTCAGGATT
ACGCCCCACGTCGCCAGACCCGTCAGCCGTCACAGTCGCCGCAATCTTCACCGCCGCCGATGGACGATTTCGCTGATGAC
GATATTCCTTTCTAA
ATGGCCCGTGGTATCAATAAAGTCATCCTCGTCGGTAATCTCGGTAACGATCCGGATATCAAATACACCCAAGGTGGTAT
GACGATCACTACCATCAGCTTGGCGACAACCAGTGTTCGTAAGGACAAGGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACAGGGTCAAGTTTTTCGGAAAACTCGGTGAGATTGCCGGGGAATATCTACGTAAGGGATCACAGTGCTATATCGAAGGG
AGCATTCGCTATGACAAGTTCACTGGCCAGGATGGTCAGGAGCGCTATGTTACAGAGATTGTTGCTGATGAGATGCAAAT
GTTGGGTGGCCGTAGTGATGGTGGCGGTATGGGCGGGGGCGGTGAGCGCCCACAGCGTCAAACATCGCAGCGTCAGGATT
ACGCCCCACGTCGCCAGACCCGTCAGCCGTCACAGTCGCCGCAATCTTCACCGCCGCCGATGGACGATTTCGCTGATGAC
GATATTCCTTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
49.153 |
100 |
0.53 |
| ssb | Glaesserella parasuis strain SC1401 |
46.927 |
100 |
0.512 |
| ssb | Neisseria meningitidis MC58 |
41.618 |
100 |
0.439 |
| ssb | Neisseria gonorrhoeae MS11 |
41.04 |
100 |
0.433 |