Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DQL55_RS11670 Genome accession   NZ_LS483304
Coordinates   2438094..2438600 (-) Length   168 a.a.
NCBI ID   WP_037565084.1    Uniprot ID   -
Organism   Staphylococcus hyicus strain NCTC10350     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2433094..2443600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL55_RS11640 (NCTC10350_02387) bioB 2433639..2434631 (-) 993 WP_039647317.1 biotin synthase BioB -
  DQL55_RS11645 (NCTC10350_02388) chrA 2434880..2436037 (-) 1158 WP_039647319.1 chromate efflux transporter -
  DQL55_RS11650 (NCTC10350_02389) - 2436049..2436351 (-) 303 WP_039647322.1 PadR family transcriptional regulator -
  DQL55_RS11655 (NCTC10350_02390) - 2436509..2436886 (+) 378 WP_039647325.1 iron chaperone -
  DQL55_RS11660 (NCTC10350_02391) - 2436963..2437664 (-) 702 WP_039647328.1 CPBP family intramembrane glutamic endopeptidase -
  DQL55_RS11665 (NCTC10350_02392) rpsR 2437804..2438046 (-) 243 WP_037565082.1 30S ribosomal protein S18 -
  DQL55_RS11670 (NCTC10350_02393) ssbA 2438094..2438600 (-) 507 WP_037565084.1 single-stranded DNA-binding protein Machinery gene
  DQL55_RS11675 (NCTC10350_02394) rpsF 2438624..2438920 (-) 297 WP_037565086.1 30S ribosomal protein S6 -
  DQL55_RS11680 (NCTC10350_02395) - 2439130..2439765 (+) 636 WP_039647331.1 NAD(P)-dependent oxidoreductase -
  DQL55_RS11685 (NCTC10350_02397) ychF 2440483..2441580 (-) 1098 WP_039647332.1 redox-regulated ATPase YchF -
  DQL55_RS11690 (NCTC10350_02398) - 2441587..2441793 (-) 207 WP_039647334.1 DUF951 domain-containing protein -
  DQL55_RS11695 (NCTC10350_02399) - 2441825..2442715 (-) 891 WP_039647336.1 mechanosensitive ion channel family protein -
  DQL55_RS11700 (NCTC10350_02400) - 2442739..2443569 (-) 831 WP_039647339.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18750.30 Da        Isoelectric Point: 5.1957

>NTDB_id=1135673 DQL55_RS11670 WP_037565084.1 2438094..2438600(-) (ssbA) [Staphylococcus hyicus strain NCTC10350]
MLNRVVLVGRLTKDPEYRTTPSGVGVATFTLAVNRTFTNNQGEREADFINCVVFRKQAENVSNFLFKGSLAGVDGRLQSR
SYENQEGRRVYVTEVVCDSVQFLEPKSQNQRHSNNQGNDFQSYGQSFGGQQQGQNSSYQNNNNHSSNNDNPFANANGPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=1135673 DQL55_RS11670 WP_037565084.1 2438094..2438600(-) (ssbA) [Staphylococcus hyicus strain NCTC10350]
ATGCTTAACAGAGTTGTATTAGTTGGTCGATTAACAAAAGATCCAGAATACAGAACGACGCCCTCAGGTGTAGGTGTTGC
GACTTTTACTTTAGCGGTAAATCGTACATTTACAAATAACCAAGGGGAACGTGAAGCAGACTTTATTAACTGTGTTGTTT
TTAGAAAGCAAGCAGAAAACGTGAGCAATTTCTTGTTCAAAGGTAGTCTCGCTGGCGTTGATGGTCGCTTACAATCACGC
AGTTACGAAAATCAAGAAGGCCGACGTGTCTATGTGACAGAAGTTGTGTGTGACAGTGTTCAATTCCTTGAACCTAAATC
ACAAAACCAACGTCATTCGAATAACCAAGGCAATGACTTCCAAAGTTATGGCCAAAGTTTCGGTGGACAACAACAAGGTC
AAAATTCATCATATCAAAACAACAACAATCATTCATCGAACAATGATAACCCATTTGCAAATGCAAATGGTCCTATCGAT
ATTAGTGATGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.407

100

0.679
  ssb Latilactobacillus sakei subsp. sakei 23K

58.48

100

0.595
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

65.476

0.381
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.363

Multiple sequence alignment