Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   DQL80_RS07770 Genome accession   NZ_LS483302
Coordinates   1571916..1572986 (-) Length   356 a.a.
NCBI ID   WP_000776414.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC8726     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1566916..1577986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL80_RS07730 (NCTC8726_01468) gcvPA 1567093..1568439 (-) 1347 WP_000019698.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  DQL80_RS07735 (NCTC8726_01469) gcvT 1568459..1569550 (-) 1092 WP_000093344.1 glycine cleavage system aminomethyltransferase GcvT -
  DQL80_RS07740 - 1569709..1570233 (-) 525 WP_111680347.1 shikimate kinase -
  DQL80_RS07745 - 1570223..1570369 (-) 147 WP_001789879.1 hypothetical protein -
  DQL80_RS07750 (NCTC8726_01471) comGF 1570466..1570963 (-) 498 WP_001796472.1 competence type IV pilus minor pilin ComGF Machinery gene
  DQL80_RS07755 (NCTC8726_01472) comGE 1570881..1571180 (-) 300 WP_172452442.1 competence protein ComGE Machinery gene
  DQL80_RS07760 (NCTC8726_01473) comGD 1571167..1571613 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  DQL80_RS07765 (NCTC8726_01474) comGC 1571591..1571902 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  DQL80_RS07770 (NCTC8726_01475) comGB 1571916..1572986 (-) 1071 WP_000776414.1 competence type IV pilus assembly protein ComGB Machinery gene
  DQL80_RS07775 (NCTC8726_01476) comGA 1572958..1573932 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  DQL80_RS07780 (NCTC8726_01477) - 1573984..1574607 (-) 624 WP_001223009.1 MBL fold metallo-hydrolase -
  DQL80_RS07785 (NCTC8726_01478) - 1574604..1574933 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  DQL80_RS07790 (NCTC8726_01479) - 1574933..1575919 (-) 987 WP_000161307.1 ROK family glucokinase -
  DQL80_RS07795 - 1575916..1576119 (-) 204 WP_000087561.1 YqgQ family protein -
  DQL80_RS07800 (NCTC8726_01480) - 1576100..1577563 (-) 1464 WP_111680349.1 rhomboid family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41523.94 Da        Isoelectric Point: 10.1113

>NTDB_id=1135601 DQL80_RS07770 WP_000776414.1 1571916..1572986(-) (comGB) [Staphylococcus aureus strain NCTC8726]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNFTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNKLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVRQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1135601 DQL80_RS07770 WP_000776414.1 1571916..1572986(-) (comGB) [Staphylococcus aureus strain NCTC8726]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGATTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGCACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAACCAGATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATCATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACATTGCAATACCCCTTAATACTAGTCTCTATTTTTA
TTGCTATGATTATAATATTAAACTTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTTATTACTAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCAATTATTATGAAATTAATTTATAACAAATTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CGGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTACCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGAAAGCTAGAAGTAGAACTAAAGCTATATTCGCAAATATTAGTGAGGCAAATAGAGGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

99.157

100

0.992
  comGB Staphylococcus aureus N315

99.157

100

0.992

Multiple sequence alignment