Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   DQL80_RS07760 Genome accession   NZ_LS483302
Coordinates   1571167..1571613 (-) Length   148 a.a.
NCBI ID   WP_001796473.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC8726     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1566167..1576613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL80_RS07730 (NCTC8726_01468) gcvPA 1567093..1568439 (-) 1347 WP_000019698.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  DQL80_RS07735 (NCTC8726_01469) gcvT 1568459..1569550 (-) 1092 WP_000093344.1 glycine cleavage system aminomethyltransferase GcvT -
  DQL80_RS07740 - 1569709..1570233 (-) 525 WP_111680347.1 shikimate kinase -
  DQL80_RS07745 - 1570223..1570369 (-) 147 WP_001789879.1 hypothetical protein -
  DQL80_RS07750 (NCTC8726_01471) comGF 1570466..1570963 (-) 498 WP_001796472.1 competence type IV pilus minor pilin ComGF Machinery gene
  DQL80_RS07755 (NCTC8726_01472) comGE 1570881..1571180 (-) 300 WP_172452442.1 competence protein ComGE Machinery gene
  DQL80_RS07760 (NCTC8726_01473) comGD 1571167..1571613 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  DQL80_RS07765 (NCTC8726_01474) comGC 1571591..1571902 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  DQL80_RS07770 (NCTC8726_01475) comGB 1571916..1572986 (-) 1071 WP_000776414.1 competence type IV pilus assembly protein ComGB Machinery gene
  DQL80_RS07775 (NCTC8726_01476) comGA 1572958..1573932 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  DQL80_RS07780 (NCTC8726_01477) - 1573984..1574607 (-) 624 WP_001223009.1 MBL fold metallo-hydrolase -
  DQL80_RS07785 (NCTC8726_01478) - 1574604..1574933 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  DQL80_RS07790 (NCTC8726_01479) - 1574933..1575919 (-) 987 WP_000161307.1 ROK family glucokinase -
  DQL80_RS07795 - 1575916..1576119 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17131.31 Da        Isoelectric Point: 10.3312

>NTDB_id=1135599 DQL80_RS07760 WP_001796473.1 1571167..1571613(-) (comGD) [Staphylococcus aureus strain NCTC8726]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=1135599 DQL80_RS07760 WP_001796473.1 1571167..1571613(-) (comGD) [Staphylococcus aureus strain NCTC8726]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAATCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
CATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993

Multiple sequence alignment