Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | DQL88_RS01980 | Genome accession | NZ_LS483301 |
| Coordinates | 410983..411486 (+) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain NCTC13394 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 406920..432657 | 410983..411486 | within | 0 |
Gene organization within MGE regions
Location: 406920..432657
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQL88_RS01945 (NCTC13394_00357) | - | 406920..407765 (+) | 846 | WP_001550052.1 | ParB/RepB/Spo0J family partition protein | - |
| DQL88_RS01950 (NCTC13394_00358) | - | 407922..408803 (+) | 882 | WP_001077602.1 | mechanosensitive ion channel family protein | - |
| DQL88_RS01955 (NCTC13394_00359) | - | 408833..409036 (+) | 204 | WP_000157345.1 | DUF951 domain-containing protein | - |
| DQL88_RS01960 (NCTC13394_00360) | ychF | 409048..410145 (+) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| DQL88_RS01965 (NCTC13394_00361) | - | 410231..410422 (-) | 192 | WP_001052483.1 | hypothetical protein | - |
| DQL88_RS01975 (NCTC13394_00362) | rpsF | 410666..410962 (+) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| DQL88_RS01980 (NCTC13394_00363) | ssbA | 410983..411486 (+) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| DQL88_RS01985 (NCTC13394_00364) | rpsR | 411538..411780 (+) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| DQL88_RS01990 (NCTC13394_00365) | - | 412009..412806 (-) | 798 | WP_000119675.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| DQL88_RS01995 (NCTC13394_00366) | - | 412830..414044 (-) | 1215 | WP_015977853.1 | tyrosine-type recombinase/integrase | - |
| DQL88_RS02000 (NCTC13394_00367) | - | 414205..414828 (-) | 624 | WP_000230361.1 | helix-turn-helix domain-containing protein | - |
| DQL88_RS02005 (NCTC13394_00368) | - | 414977..415141 (+) | 165 | WP_001611932.1 | helix-turn-helix domain-containing protein | - |
| DQL88_RS02010 (NCTC13394_00369) | - | 415142..415414 (+) | 273 | WP_001138305.1 | helix-turn-helix domain-containing protein | - |
| DQL88_RS02015 (NCTC13394_00370) | - | 415426..415599 (+) | 174 | WP_000784892.1 | hypothetical protein | - |
| DQL88_RS02020 (NCTC13394_00371) | - | 415566..415769 (+) | 204 | WP_001231376.1 | hypothetical protein | - |
| DQL88_RS02025 (NCTC13394_00372) | - | 415771..416154 (+) | 384 | WP_031788845.1 | hypothetical protein | - |
| DQL88_RS02030 (NCTC13394_00373) | tscT | 416155..416481 (+) | 327 | WP_061731591.1 | type II toxin-antitoxin system toxin TscT | - |
| DQL88_RS02035 (NCTC13394_00374) | - | 416545..417414 (+) | 870 | WP_061642140.1 | primase alpha helix C-terminal domain-containing protein | - |
| DQL88_RS02040 (NCTC13394_00375) | - | 417431..418888 (+) | 1458 | WP_000390455.1 | virulence-associated E family protein | - |
| DQL88_RS02045 (NCTC13394_00376) | - | 419189..419551 (+) | 363 | WP_001039168.1 | hypothetical protein | - |
| DQL88_RS02050 (NCTC13394_00377) | - | 419553..419837 (+) | 285 | WP_000998181.1 | hypothetical protein | - |
| DQL88_RS02055 (NCTC13394_00378) | - | 419834..420475 (+) | 642 | WP_061732984.1 | pathogenicity island protein | - |
| DQL88_RS02060 (NCTC13394_00379) | - | 421011..421352 (+) | 342 | WP_001190614.1 | hypothetical protein | - |
| DQL88_RS02065 (NCTC13394_00380) | - | 421383..422036 (+) | 654 | WP_048667708.1 | hypothetical protein | - |
| DQL88_RS02070 (NCTC13394_00381) | - | 422089..422616 (+) | 528 | WP_048667706.1 | spore coat protein | - |
| DQL88_RS02075 | - | 422748..422960 (+) | 213 | WP_025174984.1 | hypothetical protein | - |
| DQL88_RS02080 (NCTC13394_00383) | - | 422957..423526 (+) | 570 | WP_001281787.1 | terminase small subunit | - |
| DQL88_RS02085 (NCTC13394_00384) | - | 423955..424473 (+) | 519 | WP_000624990.1 | hypothetical protein | - |
| DQL88_RS02090 (NCTC13394_00385) | - | 424470..424898 (+) | 429 | WP_000591858.1 | hypothetical protein | - |
| DQL88_RS02095 (NCTC13394_00386) | - | 424885..425664 (+) | 780 | WP_000705255.1 | hypothetical protein | - |
| DQL88_RS02100 (NCTC13394_00387) | - | 426010..426291 (+) | 282 | WP_001577971.1 | hypothetical protein | - |
| DQL88_RS02105 (NCTC13394_00388) | - | 426409..426921 (+) | 513 | WP_000813311.1 | hypothetical protein | - |
| DQL88_RS15775 | - | 426937..427116 (+) | 180 | WP_000797954.1 | hypothetical protein | - |
| DQL88_RS02115 (NCTC13394_00389) | - | 427720..428658 (-) | 939 | WP_001822249.1 | Abi family protein | - |
| DQL88_RS15675 | - | 428697..429398 (-) | 702 | Protein_400 | tyrosine-type recombinase/integrase | - |
| DQL88_RS02130 (NCTC13394_00391) | selX | 429604..430215 (+) | 612 | WP_000475326.1 | staphylococcal enterotoxin-like toxin X | - |
| DQL88_RS02135 (NCTC13394_00392) | - | 430584..430952 (+) | 369 | WP_000849177.1 | YxeA family protein | - |
| DQL88_RS02140 (NCTC13394_00393) | - | 431133..431705 (+) | 573 | WP_000769720.1 | PepSY domain-containing protein | - |
| DQL88_RS02145 (NCTC13394_00394) | - | 431843..432106 (-) | 264 | WP_001055897.1 | helix-turn-helix domain-containing protein | - |
| DQL88_RS02150 (NCTC13394_00395) | - | 432406..432657 (+) | 252 | WP_000466748.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=1135543 DQL88_RS01980 WP_000934799.1 410983..411486(+) (ssbA) [Staphylococcus aureus strain NCTC13394]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=1135543 DQL88_RS01980 WP_000934799.1 410983..411486(+) (ssbA) [Staphylococcus aureus strain NCTC13394]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |