Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | DQM39_RS02145 | Genome accession | NZ_LS483298 |
| Coordinates | 374142..374633 (+) | Length | 163 a.a. |
| NCBI ID | WP_002983122.1 | Uniprot ID | A0A9X8XIP7 |
| Organism | Streptococcus pyogenes strain NCTC8225 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 369142..379633
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQM39_RS02115 (NCTC8225_00425) | - | 370331..370831 (+) | 501 | WP_032467312.1 | phosphatase PAP2 family protein | - |
| DQM39_RS02120 (NCTC8225_00426) | trxA | 370894..371226 (+) | 333 | WP_001932060.1 | thioredoxin | - |
| DQM39_RS02125 (NCTC8225_00427) | - | 371278..371865 (-) | 588 | WP_002983102.1 | helix-turn-helix domain-containing protein | - |
| DQM39_RS02130 (NCTC8225_00428) | mutY | 372042..373196 (-) | 1155 | WP_002983107.1 | A/G-specific adenine glycosylase | - |
| DQM39_RS02135 (NCTC8225_00429) | - | 373364..373657 (+) | 294 | WP_002983113.1 | hypothetical protein | - |
| DQM39_RS02140 (NCTC8225_00430) | rpsF | 373830..374120 (+) | 291 | WP_002983117.1 | 30S ribosomal protein S6 | - |
| DQM39_RS02145 (NCTC8225_00431) | ssb | 374142..374633 (+) | 492 | WP_002983122.1 | single-stranded DNA-binding protein | Machinery gene |
| DQM39_RS02150 (NCTC8225_00432) | rpsR | 374798..375037 (+) | 240 | WP_002983142.1 | 30S ribosomal protein S18 | - |
| DQM39_RS02155 (NCTC8225_00433) | - | 375170..375826 (-) | 657 | WP_002983144.1 | DUF1129 domain-containing protein | - |
| DQM39_RS02160 (NCTC8225_00434) | - | 375958..376902 (-) | 945 | WP_002983147.1 | magnesium transporter CorA family protein | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 17981.76 Da Isoelectric Point: 4.8894
>NTDB_id=1135460 DQM39_RS02145 WP_002983122.1 374142..374633(+) (ssb) [Streptococcus pyogenes strain NCTC8225]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF
Nucleotide
Download Length: 492 bp
>NTDB_id=1135460 DQM39_RS02145 WP_002983122.1 374142..374633(+) (ssb) [Streptococcus pyogenes strain NCTC8225]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCCTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTATTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCCTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTATTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.884 |
100 |
0.632 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
59.195 |
100 |
0.632 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
57.547 |
65.031 |
0.374 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
54.128 |
66.871 |
0.362 |