Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DQM96_RS22690 Genome accession   NZ_LS483296
Coordinates   4322873..4323409 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain NCTC9966     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4317873..4328409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM96_RS22665 soxR 4319601..4320065 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  DQM96_RS22670 (NCTC9966_04322) soxS 4320151..4320474 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  DQM96_RS22675 (NCTC9966_04323) pdeC 4320477..4322063 (-) 1587 WP_000019531.1 c-di-GMP phosphodiesterase PdeC -
  DQM96_RS22685 (NCTC9966_04324) yjcB 4322493..4322774 (+) 282 WP_001295689.1 YjcB family protein -
  DQM96_RS22690 (NCTC9966_04325) ssb 4322873..4323409 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  DQM96_RS22695 (NCTC9966_04326) uvrA 4323663..4326485 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  DQM96_RS22700 (NCTC9966_04327) yjbR 4326520..4326876 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  DQM96_RS22705 (NCTC9966_04328) yjbQ 4326880..4327296 (-) 417 WP_111724782.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  DQM96_RS22710 (NCTC9966_04329) aphA 4327407..4328120 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=1135413 DQM96_RS22690 WP_000168305.1 4322873..4323409(-) (ssb) [Escherichia coli strain NCTC9966]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=1135413 DQM96_RS22690 WP_000168305.1 4322873..4323409(-) (ssb) [Escherichia coli strain NCTC9966]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment