Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   XTG_RS15500 Genome accession   NZ_LR994544
Coordinates   3650217..3651611 (+) Length   464 a.a.
NCBI ID   WP_180496733.1    Uniprot ID   A0AA46HAZ5
Organism   Xanthomonas euroxanthea isolate X. euroxanthea CPBF 424     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3645217..3656611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XTG_RS15480 (XTG_003096) - 3645585..3646028 (+) 444 WP_235858452.1 hypothetical protein -
  XTG_RS15485 (XTG_003097) sucD 3646110..3646985 (-) 876 WP_047124757.1 succinate--CoA ligase subunit alpha -
  XTG_RS15490 (XTG_003098) sucC 3647010..3648179 (-) 1170 WP_016901264.1 ADP-forming succinate--CoA ligase subunit beta -
  XTG_RS15495 (XTG_003099) - 3648411..3650024 (+) 1614 WP_104544483.1 HAMP domain-containing sensor histidine kinase -
  XTG_RS15500 (XTG_003100) pilR 3650217..3651611 (+) 1395 WP_180496733.1 sigma-54 dependent transcriptional regulator Regulator
  XTG_RS15505 (XTG_003101) pilB 3651909..3653642 (-) 1734 WP_181901227.1 type IV-A pilus assembly ATPase PilB Machinery gene
  XTG_RS20755 (XTG_003102) - 3653687..3654127 (-) 441 WP_115677261.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  XTG_RS15515 (XTG_003103) - 3654375..3654827 (-) 453 WP_115677262.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  XTG_RS15520 (XTG_003104) pilC 3655181..3656434 (+) 1254 WP_115677263.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50206.62 Da        Isoelectric Point: 6.6444

>NTDB_id=1134994 XTG_RS15500 WP_180496733.1 3650217..3651611(+) (pilR) [Xanthomonas euroxanthea isolate X. euroxanthea CPBF 424]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPAPPPEQASRLLGDSSAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKNLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALDRYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAATPGSAA
VEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=1134994 XTG_RS15500 WP_180496733.1 3650217..3651611(+) (pilR) [Xanthomonas euroxanthea isolate X. euroxanthea CPBF 424]
ATGAACGAACCGAAAAGTGCCCTGGTTGTCGATGACGAGCGTGACATTCGCGAACTGCTTGTTCTCACCCTGGGCCGGAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCGCGCGAGTTGCTGGCCAACAATCCCTACGACCTGTGCCTGA
CCGACATGCGCTTGCCCGACGGCAACGGCATCGAACTGGTCACCGAAATCGCCAAACACTATCCGCAGACCCCGGTGGCG
ATGATCACCGCGTTCGGAAGCATGGACCTGGCGGTGGAAGCCTTGAAGGCCGGTGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGCCCTGCGCCGCCGGCGCCGC
CGCCGGAACAGGCCAGCCGCCTGCTTGGCGATTCCAGCGCGATGGAAAGCCTGCGCGCCACCATCGGCAAGGTGGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTCGCCCGCACCATCCACGAACAGGGCGC
CCGCGCGGCCGGCCCGTTCGTGCCAGTCAACTGCGGCGCCATCCCCGCCGAACTGATGGAAAGCGAGTTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCATGGCGGCACGCTGTTCCTGGAC
GAAGTGGCCGAACTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCCGTCGGCGC
TTCCAGCGAGTCGCTGGTGGACGTGCGCATTCTCTCGGCCACCCACAAGAACCTGGGCGACCTGGTCTCCGATGGTCGCT
TCCGCCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACCTGCCG
CAGCTGGCCGCGGCGATCATCGCGCGCCTGGCGCACAGCCACGGCCGCCCGATACCGCTACTGACCCAGTCCGCGCTCGA
TGCGCTGGACCGGTACGGCTTCCCGGGCAACGTGCGCGAGCTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCACGGCGGCCACCGGCTGGCCGCCACCCCCGGCAGCGCCGCC
GTCGAACCGCGCGAAGCCGTGGTCGACATCGACCCCGCCTCGGCCGCCCTGCCCTCCTACATCGAGCAACTGGAACGCGC
AGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGCTGGGCATCACGTTTCGGGCGT
TGCGTTACAAGTTGAAGAAGTTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Response regulator receiver domain (Response_reg)

(8-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.261

99.138

0.627
  pilR Acinetobacter baumannii strain A118

48.707

100

0.487

Multiple sequence alignment