Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JM183_RS11935 Genome accession   NZ_LR962863
Coordinates   2488001..2488501 (-) Length   166 a.a.
NCBI ID   WP_016425691.1    Uniprot ID   A0A7Z7QRU0
Organism   Staphylococcus schleiferi strain NCTC12218     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2483001..2493501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM183_RS11910 (NCTC12218_02514) - 2483473..2484132 (+) 660 WP_016425687.1 methionine ABC transporter permease -
  JM183_RS11915 (NCTC12218_02515) gmpC 2484149..2484988 (+) 840 WP_016425688.1 dipeptide ABC transporter glycylmethionine-binding lipoprotein -
  JM183_RS11920 (NCTC12218_02516) add 2485118..2486101 (-) 984 Protein_2327 adenosine deaminase -
  JM183_RS11925 (NCTC12218_02517) sph 2486469..2487458 (+) 990 WP_016425690.1 sphingomyelin phosphodiesterase -
  JM183_RS11930 (NCTC12218_02518) rpsR 2487709..2487951 (-) 243 WP_014614919.1 30S ribosomal protein S18 -
  JM183_RS11935 (NCTC12218_02519) ssbA 2488001..2488501 (-) 501 WP_016425691.1 single-stranded DNA-binding protein Machinery gene
  JM183_RS11940 (NCTC12218_02520) rpsF 2488526..2488822 (-) 297 WP_016425692.1 30S ribosomal protein S6 -
  JM183_RS11945 (NCTC12218_02521) - 2489167..2490435 (+) 1269 WP_126496450.1 B domain-containing protein -
  JM183_RS11950 (NCTC12218_02522) - 2490546..2490824 (+) 279 WP_016425694.1 hypothetical protein -
  JM183_RS11955 (NCTC12218_02523) - 2491196..2491465 (-) 270 WP_228446429.1 trypsin-like serine peptidase -
  JM183_RS11960 (NCTC12218_02524) - 2491434..2491853 (-) 420 WP_016425696.1 trypsin-like serine protease -
  JM183_RS11965 (NCTC12218_02525) ychF 2492264..2493361 (-) 1098 WP_016425697.1 redox-regulated ATPase YchF -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18542.21 Da        Isoelectric Point: 5.1957

>NTDB_id=1134923 JM183_RS11935 WP_016425691.1 2488001..2488501(-) (ssbA) [Staphylococcus schleiferi strain NCTC12218]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAINRTFTNAQGEREADFINCVVFRKQAENVNNFLFKGSLAGVDGRLQSR
SYENQEGRRVFVTEVVCDSVQFLEPKSQNQRHSNQGNDFQSYGQSFGGQQQGQNSSYQNNNQPAHNDNPFANANGPIDIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=1134923 JM183_RS11935 WP_016425691.1 2488001..2488501(-) (ssbA) [Staphylococcus schleiferi strain NCTC12218]
ATGCTTAACAGAGTCGTATTAGTAGGTCGATTAACTAAAGATCCAGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACTTTTACTCTAGCGATTAATCGTACGTTTACGAATGCGCAAGGGGAACGTGAAGCGGACTTCATTAACTGTGTAGTTT
TTCGTAAACAAGCAGAAAACGTGAACAACTTTTTGTTCAAAGGAAGTTTAGCTGGCGTTGATGGTCGCTTACAATCACGC
AGTTATGAGAACCAAGAAGGCCGACGTGTGTTCGTCACTGAAGTGGTATGTGACAGTGTTCAATTCCTTGAGCCAAAATC
ACAAAACCAACGTCACTCTAATCAAGGCAATGATTTCCAAAGCTATGGTCAGAGCTTCGGTGGGCAACAACAAGGTCAAA
ATTCGTCATATCAAAATAACAATCAACCCGCACATAACGATAATCCATTTGCGAATGCGAATGGTCCTATCGATATTAGC
GATGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z7QRU0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.205

100

0.681
  ssb Latilactobacillus sakei subsp. sakei 23K

57.895

100

0.596
  ssb Glaesserella parasuis strain SC1401

35.196

100

0.38
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.273

66.265

0.38

Multiple sequence alignment