Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JMW95_RS22060 Genome accession   NZ_LR890651
Coordinates   4536314..4536850 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain MINF_2E isolate MINF_2E     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4531314..4541850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMW95_RS22040 soxR 4533042..4533506 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  JMW95_RS22045 soxS 4533592..4533915 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  JMW95_RS22050 pdeC 4533918..4535504 (-) 1587 WP_000019535.1 c-di-GMP phosphodiesterase PdeC -
  JMW95_RS22055 yjcB 4535934..4536215 (+) 282 WP_001295689.1 YjcB family protein -
  JMW95_RS22060 ssb 4536314..4536850 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  JMW95_RS22065 uvrA 4537104..4539926 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  JMW95_RS22070 yjbR 4539961..4540317 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  JMW95_RS22075 yjbQ 4540321..4540737 (-) 417 WP_000270383.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  JMW95_RS22080 aphA 4540848..4541561 (-) 714 WP_001317548.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=1134536 JMW95_RS22060 WP_000168305.1 4536314..4536850(-) (ssb) [Escherichia coli strain MINF_2E isolate MINF_2E]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=1134536 JMW95_RS22060 WP_000168305.1 4536314..4536850(-) (ssb) [Escherichia coli strain MINF_2E isolate MINF_2E]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment