Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JMW69_RS21495 Genome accession   NZ_LR890606
Coordinates   4451814..4452350 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain MINF_8D isolate MINF_8D     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4446814..4457350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMW69_RS21475 soxR 4448542..4449006 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  JMW69_RS21480 soxS 4449092..4449415 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  JMW69_RS21485 pdeC 4449418..4451004 (-) 1587 WP_069905160.1 c-di-GMP phosphodiesterase PdeC -
  JMW69_RS21490 yjcB 4451434..4451715 (+) 282 WP_001295689.1 YjcB family protein -
  JMW69_RS21495 ssb 4451814..4452350 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  JMW69_RS21500 uvrA 4452604..4455426 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  JMW69_RS21505 yjbR 4455461..4455817 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  JMW69_RS21510 yjbQ 4455821..4456237 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  JMW69_RS21515 aphA 4456348..4457061 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=1134385 JMW69_RS21495 WP_000168305.1 4451814..4452350(-) (ssb) [Escherichia coli strain MINF_8D isolate MINF_8D]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=1134385 JMW69_RS21495 WP_000168305.1 4451814..4452350(-) (ssb) [Escherichia coli strain MINF_8D isolate MINF_8D]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment