Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NI25_RS11155 Genome accession   NZ_CP009754
Coordinates   2607680..2609311 (-) Length   543 a.a.
NCBI ID   WP_061442317.1    Uniprot ID   -
Organism   Streptomyces sp. CCM_MD2014     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2602680..2614311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI25_RS11135 (NI25_11065) - 2603649..2604428 (+) 780 WP_420710712.1 murein hydrolase activator EnvC family protein -
  NI25_RS11140 (NI25_11070) - 2604382..2604939 (-) 558 WP_061442315.1 TetR/AcrR family transcriptional regulator -
  NI25_RS11145 (NI25_11075) whiG 2605067..2605909 (-) 843 WP_061442316.1 RNA polymerase sigma factor WhiG -
  NI25_RS11150 (NI25_11080) dprA 2606190..2607332 (-) 1143 WP_061446869.1 DNA-processing protein DprA -
  NI25_RS11155 (NI25_11085) comM 2607680..2609311 (-) 1632 WP_061442317.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NI25_RS11160 (NI25_11090) - 2609311..2609673 (-) 363 WP_061442318.1 YraN family protein -
  NI25_RS11165 (NI25_11095) - 2609762..2610070 (-) 309 WP_003965949.1 DUF2469 domain-containing protein -
  NI25_RS11170 (NI25_11100) - 2610127..2610657 (-) 531 WP_061442319.1 NUDIX hydrolase -
  NI25_RS11175 (NI25_11105) lepB 2610647..2611423 (-) 777 WP_061442320.1 signal peptidase I -
  NI25_RS11180 (NI25_11110) lepB 2611528..2612550 (-) 1023 WP_061442321.1 signal peptidase I -
  NI25_RS37525 lepB 2612441..2613523 (-) 1083 Protein_2263 signal peptidase I -

Sequence

Protein


Download         Length: 543 a.a.        Molecular weight: 56819.17 Da        Isoelectric Point: 7.1108

>NTDB_id=113374 NI25_RS11155 WP_061442317.1 2607680..2609311(-) (comM) [Streptomyces sp. CCM_MD2014]
MGFARTCSVALVGVEGVVVEVQADLEPGVAAFTLVGLPDKSLTESRDRVRAAVVNSGAEWPQKKLTVGLSPASVPKSGSG
FDLAVAASVLGAAERIDPRVLADIVMIGELGLDGRVRPVRGILPAVLAAADAGYEQVVVPECAAAEASLVPGVSVLGVRS
LRQLIAVLADEPVPEEEQEQTQQGRPDPLLAGLRMPGTGAATGMHSVGAAQHDHGHDLADVVGQESARTAVEVAAAGRHH
LFLEGPPGAGKTMLAERLPAILPRLCRAESLEVTAVHSVAGLLPPGKPLIDVAPYCAPHHSATMQALVGGGPGVARPGAV
SLAHRGVLFLDETPEFSSHALDALRQPLEAGHVVIARSAGVVRFPARFLMVLAANPCPCGRFSRTDELCECPPSAIRRYQ
ARLSGPLLDRVDLRVEVDRVTRGQLAGTGPRGDTTATVADRVRAARERAAARLAGTPWRSNSEVPGRELRSRWRAAPGAL
DEAERSLERGVLTARGLDRVLRVAWTVADLVGHDRPEPRDVALALQLRTGVPRGVPMALGALT

Nucleotide


Download         Length: 1632 bp        

>NTDB_id=113374 NI25_RS11155 WP_061442317.1 2607680..2609311(-) (comM) [Streptomyces sp. CCM_MD2014]
ATGGGGTTCGCGCGTACGTGCTCGGTGGCGCTCGTAGGCGTCGAGGGCGTGGTGGTGGAGGTCCAGGCCGACCTGGAACC
GGGCGTGGCGGCGTTCACGCTGGTGGGGCTGCCGGACAAGAGCCTGACGGAGAGCCGGGACCGGGTGCGGGCGGCCGTGG
TCAACTCGGGCGCGGAGTGGCCCCAGAAGAAGCTGACGGTGGGACTCAGCCCGGCCTCGGTGCCCAAGAGCGGCAGCGGC
TTCGACCTCGCCGTCGCCGCGAGTGTCCTGGGCGCCGCGGAGCGGATCGACCCGCGGGTGCTCGCCGACATCGTGATGAT
CGGAGAGCTGGGTCTGGACGGCCGGGTGCGACCGGTGCGCGGCATCCTGCCGGCGGTGCTGGCCGCGGCGGACGCCGGGT
ACGAGCAGGTGGTGGTACCCGAGTGCGCCGCCGCCGAGGCGTCCCTGGTGCCGGGGGTGTCGGTGCTCGGCGTGCGCAGC
CTGCGCCAGCTGATCGCCGTCCTCGCCGACGAACCCGTGCCGGAGGAGGAGCAGGAGCAGACACAGCAGGGCCGCCCCGA
CCCGCTCCTGGCCGGTCTGCGCATGCCCGGCACCGGCGCGGCCACCGGAATGCACAGTGTGGGAGCGGCCCAGCACGACC
ACGGTCACGACCTCGCCGACGTCGTCGGACAGGAGTCGGCGCGCACGGCGGTGGAGGTCGCCGCGGCCGGTCGCCACCAC
CTGTTCCTGGAAGGCCCGCCCGGTGCCGGCAAGACCATGCTCGCCGAACGGCTGCCCGCCATCCTGCCCCGGCTGTGCCG
GGCGGAGTCCCTCGAGGTCACCGCCGTGCACTCGGTGGCGGGGCTGCTGCCGCCGGGCAAGCCCCTGATCGACGTGGCTC
CCTACTGCGCTCCCCACCACTCCGCGACGATGCAGGCCCTCGTCGGGGGCGGCCCCGGAGTGGCGCGGCCGGGAGCCGTG
TCGCTGGCACACCGGGGCGTCCTGTTCCTGGACGAGACGCCGGAGTTCAGCAGTCACGCGCTGGACGCGCTGCGCCAGCC
GTTGGAGGCCGGGCACGTCGTCATCGCGCGCAGCGCGGGCGTGGTGCGTTTCCCGGCGCGGTTCCTGATGGTGCTCGCCG
CCAATCCCTGCCCCTGCGGGCGGTTCTCGCGGACCGACGAGTTGTGCGAGTGCCCGCCCTCGGCGATCCGGCGCTACCAG
GCCAGGCTCTCGGGGCCGCTGCTCGACCGCGTCGACCTGCGGGTCGAGGTGGACCGGGTCACGCGCGGCCAGCTGGCGGG
CACCGGCCCCCGGGGCGACACCACCGCGACGGTCGCCGACCGGGTGCGCGCGGCCCGGGAGCGGGCGGCCGCCCGTCTCG
CGGGCACCCCGTGGCGGTCGAACAGCGAGGTGCCCGGCCGGGAGCTGCGCAGCCGCTGGCGCGCCGCGCCCGGTGCGCTG
GACGAGGCGGAGCGCAGCCTGGAACGCGGTGTCCTCACCGCCCGCGGACTCGACCGCGTCCTGCGCGTCGCCTGGACCGT
CGCGGACCTCGTCGGTCACGACCGCCCCGAACCGAGGGACGTGGCCCTGGCGCTGCAACTGCGCACCGGGGTGCCGCGCG
GCGTCCCGATGGCCCTGGGAGCACTGACGTGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(217-423)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(433-528)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

39.962

97.238

0.389
  comM Vibrio cholerae O1 biovar El Tor strain E7946

40.351

94.475

0.381
  comM Vibrio cholerae strain A1552

40.351

94.475

0.381
  comM Haemophilus influenzae Rd KW20

38.346

97.974

0.376
  comM Acinetobacter baylyi ADP1

38.563

97.422

0.376
  comM Glaesserella parasuis strain SC1401

37.406

97.974

0.366