Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JMW03_RS22170 Genome accession   NZ_LR890349
Coordinates   4572981..4573517 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain MSB1_9D isolate MSB1_9D     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4567981..4578517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMW03_RS22150 soxR 4569709..4570173 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  JMW03_RS22155 soxS 4570259..4570582 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  JMW03_RS22160 pdeC 4570585..4572171 (-) 1587 WP_000019549.1 c-di-GMP phosphodiesterase PdeC -
  JMW03_RS22165 yjcB 4572601..4572882 (+) 282 WP_001295689.1 YjcB family protein -
  JMW03_RS22170 ssb 4572981..4573517 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  JMW03_RS22175 uvrA 4573771..4576593 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  JMW03_RS22180 yjbR 4576628..4576984 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  JMW03_RS22185 yjbQ 4576988..4577404 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  JMW03_RS22190 aphA 4577515..4578228 (-) 714 WP_001315956.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=1133678 JMW03_RS22170 WP_000168305.1 4572981..4573517(-) (ssb) [Escherichia coli strain MSB1_9D isolate MSB1_9D]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=1133678 JMW03_RS22170 WP_000168305.1 4572981..4573517(-) (ssb) [Escherichia coli strain MSB1_9D isolate MSB1_9D]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment