Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JMW01_RS14955 Genome accession   NZ_LR890270
Coordinates   3191411..3191947 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain MINF_7C isolate MINF_7C     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3186411..3196947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMW01_RS14935 aphA 3186699..3187412 (+) 714 WP_001226928.1 acid phosphatase AphA -
  JMW01_RS14940 yjbQ 3187523..3187939 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  JMW01_RS14945 yjbR 3187943..3188299 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  JMW01_RS14950 uvrA 3188334..3191156 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  JMW01_RS14955 ssb 3191411..3191947 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  JMW01_RS14960 yjcB 3192046..3192327 (-) 282 WP_001295689.1 YjcB family protein -
  JMW01_RS14965 pdeC 3192757..3194343 (+) 1587 WP_001550430.1 c-di-GMP phosphodiesterase PdeC -
  JMW01_RS14970 soxS 3194346..3194669 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  JMW01_RS14975 soxR 3194755..3195219 (+) 465 WP_000412424.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=1133474 JMW01_RS14955 WP_000168305.1 3191411..3191947(+) (ssb) [Escherichia coli strain MINF_7C isolate MINF_7C]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=1133474 JMW01_RS14955 WP_000168305.1 3191411..3191947(+) (ssb) [Escherichia coli strain MINF_7C isolate MINF_7C]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACTGAAGTGGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGCCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCTGCT
CCGGCAGCACCGTCTAATGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment