Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JMV70_RS10225 Genome accession   NZ_LR884459
Coordinates   2544154..2545209 (+) Length   351 a.a.
NCBI ID   WP_201498662.1    Uniprot ID   -
Organism   Psychrobacter arenosus isolate Psychrobacter arenosus R7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2539154..2550209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMV70_RS10215 - 2540657..2541175 (+) 519 WP_201498660.1 DUF6586 family protein -
  JMV70_RS10220 - 2541259..2543970 (-) 2712 WP_201498661.1 penicillin-binding protein 1A -
  JMV70_RS10225 comM 2544154..2545209 (+) 1056 WP_201498662.1 pilus assembly protein PilM Machinery gene
  JMV70_RS10230 - 2545209..2545880 (+) 672 WP_201498663.1 PilN domain-containing protein -
  JMV70_RS10235 - 2545877..2546596 (+) 720 WP_201498664.1 type 4a pilus biogenesis protein PilO -
  JMV70_RS10240 - 2546596..2547141 (+) 546 WP_201498665.1 pilus assembly protein PilP -
  JMV70_RS10245 pilQ 2547168..2549537 (+) 2370 WP_201498666.1 type IV pilus secretin PilQ -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 38534.99 Da        Isoelectric Point: 4.5677

>NTDB_id=1133186 JMV70_RS10225 WP_201498662.1 2544154..2545209(+) (comM) [Psychrobacter arenosus isolate Psychrobacter arenosus R7]
MRLFSSKGRQLVGVDVSATCVKMVDIKRIQGVFHLQSYGIERLAPGVVVDKLVADTEAVGEVVARLARRCHVTGQNVASA
VSGSAVITKIIDMEASLTDSERDAQIRLDADQYIPYPLSEVNLDFEVIGPSQINDRMVQVLLAASRSENVEQRVDALAFG
GMTTKVMDIESHAIERAFALMVDSLPNHPELVALVDIGHTQTTLYVAKNGEFVYSREQLFGGAQLTEAIQNRYGLSYEEA
TINKREQTLPDDYYNELLMPFMDNVIQQITRSLQFYFSSSQYNNVDHIVLCGGSAVIPGLVGMVQQKLGNPTSIANPFIN
MSIAPQIDSEQLLLDAPSLMVACGLALRSFD

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=1133186 JMV70_RS10225 WP_201498662.1 2544154..2545209(+) (comM) [Psychrobacter arenosus isolate Psychrobacter arenosus R7]
GTGAGGTTATTCTCTTCTAAAGGACGCCAGTTGGTGGGTGTAGATGTCAGTGCAACCTGTGTAAAGATGGTGGATATCAA
GCGCATACAAGGCGTTTTTCACCTTCAATCATATGGCATTGAAAGATTAGCACCAGGGGTGGTGGTCGATAAACTTGTTG
CTGACACAGAAGCCGTTGGCGAAGTGGTGGCCAGACTAGCGAGACGCTGTCATGTAACTGGCCAAAATGTGGCTTCAGCA
GTGTCTGGTTCTGCTGTAATCACTAAAATTATTGATATGGAGGCTTCGCTCACAGATTCGGAGCGGGATGCCCAAATCCG
TTTGGATGCTGACCAATATATTCCTTATCCTTTGTCGGAAGTCAACCTTGATTTTGAGGTCATTGGCCCCTCACAAATTA
ATGATCGCATGGTCCAGGTGTTATTAGCCGCCTCGCGCTCAGAAAACGTTGAGCAGCGCGTCGATGCCTTAGCTTTTGGC
GGTATGACCACCAAAGTGATGGATATTGAATCGCATGCTATTGAGCGGGCTTTTGCGCTAATGGTCGACAGCTTGCCCAA
CCATCCTGAACTGGTGGCTTTGGTAGACATTGGCCATACGCAAACCACTTTATATGTAGCGAAAAATGGCGAATTTGTCT
ACAGCCGAGAACAGTTGTTTGGCGGTGCGCAGCTTACCGAGGCCATTCAAAACCGTTATGGTTTGTCCTATGAAGAAGCG
ACTATTAATAAGCGCGAGCAAACCCTGCCGGACGATTATTATAATGAGCTGTTGATGCCTTTTATGGACAATGTCATTCA
GCAAATTACCCGCTCTTTACAGTTCTATTTTTCTTCTAGCCAGTACAATAATGTGGACCATATCGTGTTGTGTGGGGGCA
GTGCCGTTATCCCCGGTCTCGTTGGCATGGTGCAGCAGAAACTGGGCAACCCAACGTCTATCGCTAACCCCTTTATCAAC
ATGTCTATAGCGCCGCAAATTGATAGCGAGCAGCTGTTGCTTGATGCCCCAAGCTTAATGGTAGCTTGTGGTTTGGCCCT
AAGGAGCTTCGACTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

50.997

100

0.51
  pilM Acinetobacter baumannii D1279779

50.427

100

0.504
  comM Acinetobacter baylyi ADP1

48.718

100

0.487
  pilM Legionella pneumophila strain ERS1305867

40.51

100

0.407

Multiple sequence alignment