Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JLZ97_RS21615 Genome accession   NZ_LR882990
Coordinates   4511313..4511849 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli isolate L7_E1373_ETEC     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4506313..4516849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JLZ97_RS21595 soxR 4508041..4508505 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  JLZ97_RS21600 (ETECE1373_04374) soxS 4508591..4508914 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  JLZ97_RS21605 (ETECE1373_04375) pdeC 4508917..4510503 (-) 1587 WP_001719291.1 c-di-GMP phosphodiesterase PdeC -
  JLZ97_RS21610 (ETECE1373_04376) yjcB 4510933..4511214 (+) 282 WP_001295689.1 YjcB family protein -
  JLZ97_RS21615 (ETECE1373_04377) ssb 4511313..4511849 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  JLZ97_RS21620 (ETECE1373_04378) uvrA 4512104..4514926 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  JLZ97_RS21625 (ETECE1373_04379) yjbR 4514961..4515317 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  JLZ97_RS21630 (ETECE1373_04380) yjbQ 4515321..4515737 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  JLZ97_RS21635 (ETECE1373_04381) aphA 4515848..4516561 (-) 714 WP_024171594.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=1133035 JLZ97_RS21615 WP_000168305.1 4511313..4511849(-) (ssb) [Escherichia coli isolate L7_E1373_ETEC]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=1133035 JLZ97_RS21615 WP_000168305.1 4511313..4511849(-) (ssb) [Escherichia coli isolate L7_E1373_ETEC]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCTGGTCAGGATCGCTACACCACAGAAGTTGTGGTGAACGTTGG
CGGCACTATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCTCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment