Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | JLZ94_RS07765 | Genome accession | NZ_LR882978 |
| Coordinates | 1572968..1573474 (-) | Length | 168 a.a. |
| NCBI ID | WP_000098523.1 | Uniprot ID | - |
| Organism | Escherichia coli isolate L3_CS7_E2980 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1568699..1611474 | 1572968..1573474 | within | 0 |
Gene organization within MGE regions
Location: 1568699..1611474
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JLZ94_RS07710 (ETECE2980_01903) | torI | 1568699..1568899 (-) | 201 | WP_001163428.1 | response regulator inhibitor TorI | - |
| JLZ94_RS07715 (ETECE2980_01904) | - | 1568957..1569124 (-) | 168 | WP_032243330.1 | hypothetical protein | - |
| JLZ94_RS07720 (ETECE2980_01905) | - | 1569283..1569561 (-) | 279 | WP_001388117.1 | DUF4752 family protein | - |
| JLZ94_RS25695 | - | 1569561..1569812 (-) | 252 | Protein_1521 | DUF551 domain-containing protein | - |
| JLZ94_RS07730 (ETECE2980_01907) | - | 1570357..1570743 (-) | 387 | WP_001388115.1 | ead/Ea22-like family protein | - |
| JLZ94_RS07735 (ETECE2980_01908) | - | 1570762..1571490 (-) | 729 | WP_032243331.1 | site-specific DNA-methyltransferase | - |
| JLZ94_RS07740 (ETECE2980_01909) | - | 1571487..1571639 (-) | 153 | WP_001388113.1 | hypothetical protein | - |
| JLZ94_RS07745 (ETECE2980_01910) | - | 1571636..1571803 (-) | 168 | WP_001388112.1 | DUF2737 family protein | - |
| JLZ94_RS07750 (ETECE2980_01911) | - | 1571800..1572090 (-) | 291 | WP_001388111.1 | DUF5405 family protein | - |
| JLZ94_RS07755 (ETECE2980_01912) | - | 1572101..1572394 (-) | 294 | WP_001388110.1 | phage anti-RecBCD protein | - |
| JLZ94_RS07760 (ETECE2980_01913) | - | 1572411..1572959 (-) | 549 | WP_001016186.1 | 3'-5' exonuclease | - |
| JLZ94_RS07765 (ETECE2980_01914) | ssb | 1572968..1573474 (-) | 507 | WP_000098523.1 | single-stranded DNA-binding protein | Machinery gene |
| JLZ94_RS07770 (ETECE2980_01915) | - | 1573471..1573938 (-) | 468 | WP_000018646.1 | HNH endonuclease | - |
| JLZ94_RS07775 (ETECE2980_01916) | - | 1573939..1574646 (-) | 708 | WP_000365280.1 | Rad52/Rad22 family DNA repair protein | - |
| JLZ94_RS07780 (ETECE2980_01918) | - | 1574901..1575071 (-) | 171 | WP_001183771.1 | hypothetical protein | - |
| JLZ94_RS07785 (ETECE2980_01919) | - | 1575266..1575736 (-) | 471 | WP_000167581.1 | hypothetical protein | - |
| JLZ94_RS07790 (ETECE2980_01920) | - | 1575870..1576208 (-) | 339 | WP_000930322.1 | hypothetical protein | - |
| JLZ94_RS07795 (ETECE2980_01921) | - | 1576211..1576516 (-) | 306 | WP_000256573.1 | hypothetical protein | - |
| JLZ94_RS07800 | - | 1576831..1577481 (-) | 651 | WP_001095982.1 | LexA family transcriptional regulator | - |
| JLZ94_RS07805 (ETECE2980_01923) | - | 1577562..1577747 (+) | 186 | WP_000276885.1 | Cro/CI family transcriptional regulator | - |
| JLZ94_RS07810 (ETECE2980_01924) | - | 1577863..1578159 (+) | 297 | WP_001388108.1 | CII family transcriptional regulator | - |
| JLZ94_RS07815 (ETECE2980_01925) | - | 1578192..1578353 (+) | 162 | WP_000166961.1 | hypothetical protein | - |
| JLZ94_RS07820 (ETECE2980_01926) | - | 1578340..1579230 (+) | 891 | WP_001554884.1 | hypothetical protein | - |
| JLZ94_RS07825 (ETECE2980_01927) | - | 1579220..1580656 (+) | 1437 | WP_001388106.1 | DnaB-like helicase C-terminal domain-containing protein | - |
| JLZ94_RS07830 (ETECE2980_01928) | - | 1580656..1580925 (+) | 270 | WP_001036029.1 | hypothetical protein | - |
| JLZ94_RS07835 (ETECE2980_01930) | istA | 1581145..1582167 (+) | 1023 | WP_001356151.1 | IS21-like element IS100 family transposase | - |
| JLZ94_RS07840 (ETECE2980_01931) | istB | 1582164..1582946 (+) | 783 | WP_001317493.1 | IS21-like element IS100kyp family helper ATPase IstB | - |
| JLZ94_RS26000 | - | 1583131..1583256 (+) | 126 | Protein_1545 | HNH endonuclease signature motif containing protein | - |
| JLZ94_RS25705 | - | 1583311..1583574 (+) | 264 | WP_248698003.1 | AP2 domain-containing protein | - |
| JLZ94_RS07850 (ETECE2980_01932) | - | 1583635..1583850 (+) | 216 | WP_000103679.1 | hypothetical protein | - |
| JLZ94_RS07855 (ETECE2980_01933) | - | 1583861..1584097 (+) | 237 | WP_001281772.1 | Lar family restriction alleviation protein | - |
| JLZ94_RS07860 (ETECE2980_01934) | - | 1584054..1584500 (+) | 447 | WP_001385995.1 | recombination protein NinB | - |
| JLZ94_RS07865 (ETECE2980_01935) | - | 1584497..1585024 (+) | 528 | WP_001385994.1 | phage N-6-adenine-methyltransferase | - |
| JLZ94_RS07870 | - | 1585021..1585122 (+) | 102 | Protein_1551 | NinE family protein | - |
| JLZ94_RS07875 | - | 1585174..1585314 (+) | 141 | Protein_1552 | nuclease domain-containing protein | - |
| JLZ94_RS07880 (ETECE2980_01937) | - | 1585311..1585673 (+) | 363 | WP_001008200.1 | RusA family crossover junction endodeoxyribonuclease | - |
| JLZ94_RS07885 (ETECE2980_01938) | - | 1585670..1585858 (+) | 189 | WP_000994516.1 | protein ninH | - |
| JLZ94_RS07890 (ETECE2980_01939) | - | 1585855..1586343 (+) | 489 | WP_001385993.1 | antiterminator Q family protein | - |
| JLZ94_RS07905 (ETECE2980_01942) | - | 1586832..1587155 (+) | 324 | WP_000783734.1 | phage holin, lambda family | - |
| JLZ94_RS07910 (ETECE2980_01943) | - | 1587139..1587615 (+) | 477 | WP_000229392.1 | glycoside hydrolase family protein | - |
| JLZ94_RS07915 (ETECE2980_01944) | - | 1587612..1588049 (+) | 438 | WP_001385991.1 | lysis protein | - |
| JLZ94_RS07920 (ETECE2980_01945) | - | 1588128..1588607 (+) | 480 | WP_000191869.1 | DUF2829 domain-containing protein | - |
| JLZ94_RS07925 (ETECE2980_01946) | - | 1588903..1589064 (+) | 162 | WP_001704594.1 | hypothetical protein | - |
| JLZ94_RS07930 (ETECE2980_01947) | - | 1589075..1589239 (+) | 165 | WP_001386098.1 | hypothetical protein | - |
| JLZ94_RS07935 (ETECE2980_01948) | - | 1589379..1589621 (+) | 243 | WP_000807785.1 | DUF2560 family protein | - |
| JLZ94_RS07940 (ETECE2980_01949) | - | 1589657..1590145 (+) | 489 | WP_024167798.1 | DNA-packaging protein | - |
| JLZ94_RS07945 (ETECE2980_01950) | - | 1590123..1591622 (+) | 1500 | WP_000417851.1 | terminase family protein | - |
| JLZ94_RS07950 (ETECE2980_01951) | - | 1591623..1593788 (+) | 2166 | WP_001386097.1 | portal protein | - |
| JLZ94_RS07955 (ETECE2980_01952) | - | 1593802..1594713 (+) | 912 | WP_000373006.1 | scaffold protein | - |
| JLZ94_RS07960 (ETECE2980_01953) | - | 1594713..1596008 (+) | 1296 | WP_001388950.1 | P22 phage major capsid protein family protein | - |
| JLZ94_RS07965 (ETECE2980_01954) | - | 1596053..1596313 (+) | 261 | WP_024180326.1 | hypothetical protein | - |
| JLZ94_RS07970 (ETECE2980_01955) | - | 1596291..1596791 (+) | 501 | WP_001054834.1 | packaged DNA stabilization gp4 family protein | - |
| JLZ94_RS07975 (ETECE2980_01956) | - | 1596791..1598209 (+) | 1419 | WP_001386094.1 | packaged DNA stabilization protein gp10 | - |
| JLZ94_RS07980 (ETECE2980_01957) | - | 1598209..1599057 (+) | 849 | WP_001388949.1 | tail needle knob protein | - |
| JLZ94_RS07985 (ETECE2980_01958) | - | 1599057..1599524 (+) | 468 | WP_001386092.1 | DUF2824 family protein | - |
| JLZ94_RS07990 (ETECE2980_01959) | - | 1599511..1600191 (+) | 681 | WP_001708097.1 | hypothetical protein | - |
| JLZ94_RS07995 (ETECE2980_01960) | - | 1600201..1601541 (+) | 1341 | WP_001386090.1 | phage DNA ejection protein | - |
| JLZ94_RS08000 (ETECE2980_01961) | - | 1601526..1603649 (+) | 2124 | WP_000224776.1 | hypothetical protein | - |
| JLZ94_RS08005 (ETECE2980_01962) | - | 1603646..1603873 (-) | 228 | WP_000816058.1 | hypothetical protein | - |
| JLZ94_RS08010 (ETECE2980_01963) | - | 1603902..1604462 (-) | 561 | WP_000627667.1 | hypothetical protein | - |
| JLZ94_RS08015 (ETECE2980_01964) | - | 1604470..1604748 (-) | 279 | WP_000132668.1 | hypothetical protein | - |
| JLZ94_RS08020 (ETECE2980_01965) | - | 1604751..1604999 (-) | 249 | WP_021514397.1 | Arc family DNA-binding protein | - |
| JLZ94_RS08025 (ETECE2980_01966) | - | 1605105..1605245 (+) | 141 | WP_001386205.1 | Arc family DNA-binding protein | - |
| JLZ94_RS08030 (ETECE2980_01968) | - | 1605508..1606386 (+) | 879 | WP_001386203.1 | phage repressor protein/antirepressor Ant | - |
| JLZ94_RS08035 (ETECE2980_01969) | - | 1606487..1608526 (+) | 2040 | WP_200999704.1 | phage tailspike protein | - |
| JLZ94_RS08040 (ETECE2980_01970) | - | 1608583..1609908 (-) | 1326 | WP_001703470.1 | O-antigen polymerase | - |
| JLZ94_RS08045 (ETECE2980_01971) | intS | 1610323..1611474 (-) | 1152 | WP_001388105.1 | prophage integrase IntS | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 18761.06 Da Isoelectric Point: 8.4877
>NTDB_id=1133006 JLZ94_RS07765 WP_000098523.1 1572968..1573474(-) (ssb) [Escherichia coli isolate L3_CS7_E2980]
MSSRGINKVIILGRVGQDPEVRYSPSGTAFANLTIATSEQWRDKNTGEQKELTEWHRVAVSGKLAEVVGQYVKKGDQIYF
EGMLRTRKWKDQSGQDRYTTEVHVGINGVMQMLGGIGDSKQQAASRQSQKPQQQSSPAQHNEPPMDFDDDIPFAPVTLPF
PRHAIHAI
MSSRGINKVIILGRVGQDPEVRYSPSGTAFANLTIATSEQWRDKNTGEQKELTEWHRVAVSGKLAEVVGQYVKKGDQIYF
EGMLRTRKWKDQSGQDRYTTEVHVGINGVMQMLGGIGDSKQQAASRQSQKPQQQSSPAQHNEPPMDFDDDIPFAPVTLPF
PRHAIHAI
Nucleotide
Download Length: 507 bp
>NTDB_id=1133006 JLZ94_RS07765 WP_000098523.1 1572968..1573474(-) (ssb) [Escherichia coli isolate L3_CS7_E2980]
ATGAGTTCTCGCGGGATAAATAAGGTGATTATCCTTGGTCGGGTAGGACAAGACCCGGAAGTTCGATACTCACCATCAGG
AACAGCGTTCGCTAACCTGACAATAGCCACGTCAGAACAATGGCGAGATAAAAATACTGGCGAGCAAAAGGAATTGACTG
AATGGCATCGTGTTGCTGTATCCGGGAAACTGGCTGAGGTCGTGGGGCAGTATGTGAAAAAAGGTGATCAGATTTATTTC
GAGGGAATGCTGAGAACCAGAAAGTGGAAAGACCAGTCAGGGCAAGACCGTTACACAACCGAGGTTCATGTCGGAATTAA
TGGCGTGATGCAAATGCTTGGCGGCATTGGCGACAGCAAACAACAAGCAGCCAGCAGGCAATCACAGAAGCCACAGCAGC
AATCATCACCAGCACAACACAACGAACCTCCGATGGATTTTGACGACGATATACCCTTTGCACCAGTAACTCTCCCCTTC
CCTCGTCACGCTATTCACGCAATTTAA
ATGAGTTCTCGCGGGATAAATAAGGTGATTATCCTTGGTCGGGTAGGACAAGACCCGGAAGTTCGATACTCACCATCAGG
AACAGCGTTCGCTAACCTGACAATAGCCACGTCAGAACAATGGCGAGATAAAAATACTGGCGAGCAAAAGGAATTGACTG
AATGGCATCGTGTTGCTGTATCCGGGAAACTGGCTGAGGTCGTGGGGCAGTATGTGAAAAAAGGTGATCAGATTTATTTC
GAGGGAATGCTGAGAACCAGAAAGTGGAAAGACCAGTCAGGGCAAGACCGTTACACAACCGAGGTTCATGTCGGAATTAA
TGGCGTGATGCAAATGCTTGGCGGCATTGGCGACAGCAAACAACAAGCAGCCAGCAGGCAATCACAGAAGCCACAGCAGC
AATCATCACCAGCACAACACAACGAACCTCCGATGGATTTTGACGACGATATACCCTTTGCACCAGTAACTCTCCCCTTC
CCTCGTCACGCTATTCACGCAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
61.017 |
100 |
0.643 |
| ssb | Glaesserella parasuis strain SC1401 |
45.304 |
100 |
0.488 |
| ssb | Neisseria meningitidis MC58 |
38.636 |
100 |
0.405 |
| ssb | Neisseria gonorrhoeae MS11 |
38.636 |
100 |
0.405 |