Detailed information NTG1132957

Bioinformatically predicted

Overview

• Name: pilH
• Type: Machinery gene
• Locus tag: NMK36_RS00220
• Genome accession: NZ_LR882967
• Coordinates: 69558..69923 (+)
• Length: 121 a.a.
• NCBI ID: WP_072718823.1
• Uniprot ID: A0A9W4CDI4
• Organism: Planktothrix pseudagardhii strain No.713
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 64558..74923

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NMK36_RS00205 (NO713_00039)	-	64943..65701 (+)	759	WP_072718820.1	Crp/Fnr family transcriptional regulator	-
NMK36_RS00210 (NO713_00040)	hmpF	65843..67588 (-)	1746	WP_072718821.1	pilus motility taxis protein HmpF	-
NMK36_RS00215 (NO713_00041)	-	67852..69087 (+)	1236	WP_072718822.1	response regulator	-
NMK36_RS00220 (NO713_00042)	pilH	69558..69923 (+)	366	WP_072718823.1	response regulator transcription factor	Machinery gene
NMK36_RS00225 (NO713_00043)	-	69936..70460 (+)	525	WP_072718824.1	chemotaxis protein CheW	-
NMK36_RS00230 (NO713_00044)	-	70612..71082 (+)	471	WP_254172724.1	tol-pal system YbgF family protein	-
NMK36_RS00235 (NO713_00045)	-	71111..74047 (+)	2937	WP_254172725.1	methyl-accepting chemotaxis protein	-

Sequence

Protein

• Length: 121 a.a.
• Molecular weight: 13556.78 Da
• Isoelectric Point: 6.3135

>NTDB_id=1132957 NMK36_RS00220 WP_072718823.1 69558..69923(+) (pilH) [Planktothrix pseudagardhii strain No.713]
MNKVMVVEDSVTQREMISNLLKDSGLQVSVASDGVEALEQVQKSCPDLMVLDIVMPRMNGYELCRRLKSDPKTRNIAIVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide

• Length: 366 bp

>NTDB_id=1132957 NMK36_RS00220 WP_072718823.1 69558..69923(+) (pilH) [Planktothrix pseudagardhii strain No.713]
ATGAATAAAGTTATGGTGGTGGAAGATAGTGTCACCCAACGGGAGATGATTTCTAATCTTCTCAAAGATAGTGGCTTACA
GGTCAGTGTCGCCAGTGATGGTGTAGAAGCATTAGAACAAGTCCAAAAAAGCTGCCCCGATTTAATGGTGCTCGATATTG
TCATGCCTCGGATGAACGGCTATGAACTTTGTCGTCGCCTCAAATCCGATCCCAAAACCCGCAATATTGCCATTGTGATG
TGTTCTTCTAAAGGGGAAGAATTTGATCGTTATTGGGGAATGAAACAGGGGGCAGATGCTTATATCGCTAAACCGTTCCA
GCCGACCGAATTAGTCGGAACTGTTAAACAATTGCTCAGAGGGTAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (4-115)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilH	Synechocystis sp. PCC 6803	75.833	99.174	0.752
chpA	Acinetobacter baumannii strain A118	40.517	95.868	0.388
pilG	Acinetobacter baumannii strain A118	40	95.041	0.38
micA	Streptococcus pneumoniae Cp1015	37.5	99.174	0.372