Detailed information NTG1132462

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: H7A87_RS15480
• Genome accession: NZ_LR861805
• Coordinates: 3653216..3654274 (-)
• Length: 352 a.a.
• NCBI ID: WP_104584767.1
• Uniprot ID: -
• Organism: Xanthomonas sp. CPBF 426 isolate
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3648216..3659274

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H7A87_RS15460 (XSP_003107)	-	3649270..3651237 (-)	1968	WP_119127489.1	type IV pilus secretin PilQ family protein	-
H7A87_RS15465 (XSP_003108)	-	3651257..3651790 (-)	534	WP_104584778.1	pilus assembly protein PilP	-
H7A87_RS15470 (XSP_003109)	-	3651787..3652452 (-)	666	WP_104584775.1	type 4a pilus biogenesis protein PilO	-
H7A87_RS15475 (XSP_003110)	-	3652449..3653216 (-)	768	WP_119127487.1	PilN domain-containing protein	-
H7A87_RS15480 (XSP_003111)	comM	3653216..3654274 (-)	1059	WP_104584767.1	pilus assembly protein PilM	Machinery gene
H7A87_RS15485 (XSP_003112)	-	3654490..3656907 (+)	2418	WP_119127485.1	penicillin-binding protein 1A	-
H7A87_RS20865	-	3657023..3657229 (-)	207	WP_232087860.1	hypothetical protein	-
H7A87_RS15490 (XSP_003113)	-	3657200..3657772 (+)	573	WP_232087861.1	hypothetical protein	-
H7A87_RS15495 (XSP_003114)	-	3657876..3659165 (-)	1290	WP_039409911.1	citrate synthase	-

Sequence

Protein

• Length: 352 a.a.
• Molecular weight: 37606.21 Da
• Isoelectric Point: 4.3924

>NTDB_id=1132462 H7A87_RS15480 WP_104584767.1 3653216..3654274(-) (comM) [Xanthomonas sp. CPBF 426 isolate]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDLEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRAGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALSRLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide

• Length: 1059 bp

>NTDB_id=1132462 H7A87_RS15480 WP_104584767.1 3653216..3654274(-) (comM) [Xanthomonas sp. CPBF 426 isolate]
GTGGGGCTTCTACCCAAGAGTCAGTCGCCACTTATTGGTGTCGATATCAGTTCCACTGCGGTCAAGCTCCTGCAGCTGTC
GCGCAGCGGGAATCGTTTCCGCGTGGAACATTACGCCGTAGAGCCGTTGCCGCCGAATGCGGTCGTGGAAAAGAACATCG
TCGAAGTCGAGGCGGTGGGCGAGGCCATCCGCCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAATGCAGCAGCCGCG
GTGGCCGGGTCGGCGGTGATCACCAAGCTGATCCCGATGCCGGCCGATCTGGATGACAGCGATCTGGAAGCGCAGGTCGA
ACTGGAAGCCACCAATTACATCCCGTACCCGATCGAGGAAGTGAATCTCGACTTCGAGGTGCTCGGCCCGATGCCCAACA
GCCCGGACATGGTCCAGGTGCTGCTGGCGGCCTCGCGTTCGGAGAACGTGGAACTGCGCCAGTCTGCGCTGGAACTGGGT
GGCCTGACCGCCAAGGTCATGGACGTGGAGGCCTTCGCGGTCGAGAACGCCTTTGCCCTGGTCGCCAGCGAGCTGCCGGT
GGCTGCCGATGCGGTGGTGGCGCTGGTGGACATCGGCGCGACCATGACCACGTTGAGCGTGCTGCGCGCCGGTCGCAGCC
TGTATAGCCGCGAGCAGGTCTTCGGCGGCAAGCAGCTCACCGACGAGGTGATGCGCCGGTACGGGCTGACCTACGAAGAA
GCCGGTCTGGCCAAGCGTCAGGGCGGTTTGCCGGAAAGCTACGAGGTCGAAGTGCTGGAGCCGTTCAAGGAGGCGACGGT
GCAGCAGATCAGCCGTTTGCTGCAGTTCTTCTACGCAGGCAGCGAATTCAATCGCGTCGACTGCATCGTGCTGGCCGGTG
GTTGCGCGGCGCTGTCGCGCCTGCCGGAAATGGTGGAAGAGCAGCTCGGCGTGACCACCGTGGTCGCCAACCCGCTTGCG
CAGATGACGCTGGGCCCAAAGGTCCAGGCCCATGCGCTGGCGCTGGATGCACCTGCATTGATGATTGCCACCGGCCTGGC
CCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (13-351)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Acinetobacter baylyi ADP1	51.282	99.716	0.511
comM	Acinetobacter nosocomialis M2	51.136	100	0.511
pilM	Acinetobacter baumannii D1279779	50.852	100	0.509
pilM	Legionella pneumophila strain ERS1305867	47.293	99.716	0.472