Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H7A87_RS13525 Genome accession   NZ_LR861805
Coordinates   3168256..3168780 (-) Length   174 a.a.
NCBI ID   WP_119127850.1    Uniprot ID   -
Organism   Xanthomonas sp. CPBF 426 isolate     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3163256..3173780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7A87_RS13510 (XSP_002713) paoA 3163915..3164565 (-) 651 WP_180496700.1 aldehyde dehydrogenase iron-sulfur subunit PaoA -
  H7A87_RS13515 (XSP_002714) - 3165175..3166182 (-) 1008 WP_119127852.1 NAD(P)-dependent alcohol dehydrogenase -
  H7A87_RS13520 (XSP_002715) - 3166478..3167962 (+) 1485 WP_104583105.1 sensor domain-containing diguanylate cyclase -
  H7A87_RS13525 (XSP_002716) ssb 3168256..3168780 (-) 525 WP_119127850.1 single-stranded DNA-binding protein Machinery gene
  H7A87_RS13530 (XSP_002717) - 3169056..3170054 (+) 999 WP_104648115.1 polyprenyl synthetase family protein -
  H7A87_RS13535 (XSP_002718) - 3170254..3171054 (-) 801 WP_164739146.1 dienelactone hydrolase family protein -
  H7A87_RS13540 (XSP_002719) murD 3171211..3172620 (-) 1410 WP_119127848.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18817.72 Da        Isoelectric Point: 5.3177

>NTDB_id=1132453 H7A87_RS13525 WP_119127850.1 3168256..3168780(-) (ssb) [Xanthomonas sp. CPBF 426 isolate]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDREGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGGAGMGGDRPQRSQAPRQQQGGGGQGGGQDYAPRRQQPAQQQS
APPMDDFADDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=1132453 H7A87_RS13525 WP_119127850.1 3168256..3168780(-) (ssb) [Xanthomonas sp. CPBF 426 isolate]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATCACGCGCGTGAGTCTGGCCACCACCAGCATGCGCAAGGACCGCGAGGGCAACAACCAGGAGCGCACCGAGTGGC
ACCGCGTGGTGTTCTTCGGCAAGCTGGGCGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCGCAGGTGTACGTCGAAGGC
GAGCTGCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAGAAGTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGTGGCGAAGGCGGTGGTGGTGGTGGTGCTGGCATGGGCGGCGATCGCCCGCAGCGCAGCCAGGCGCCGC
GCCAGCAGCAAGGCGGCGGTGGTCAGGGCGGCGGTCAGGACTATGCCCCGCGTCGTCAGCAGCCCGCCCAGCAGCAGTCG
GCACCGCCGATGGACGATTTTGCCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

46.196

100

0.489
  ssb Glaesserella parasuis strain SC1401

46.196

100

0.489
  ssb Neisseria meningitidis MC58

46.067

100

0.471
  ssb Neisseria gonorrhoeae MS11

46.067

100

0.471

Multiple sequence alignment