Detailed information NTG1132413

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: CFBP2533_RS05165
• Genome accession: NZ_LR828261
• Coordinates: 1241198..1242256 (+)
• Length: 352 a.a.
• NCBI ID: WP_043909467.1
• Uniprot ID: A0A0G8KJ77
• Organism: Xanthomonas hortorum pv. pelargonii strain CFBP 2533 isolate Kemp 41
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1236198..1247256

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CFBP2533_RS05150 (CFBP2533_10400)	-	1236296..1237585 (+)	1290	WP_168958753.1	citrate synthase	-
CFBP2533_RS05155 (CFBP2533_10410)	-	1237689..1238339 (-)	651	WP_168958754.1	hypothetical protein	-
CFBP2533_RS05160 (CFBP2533_10420)	-	1238556..1240982 (-)	2427	WP_168958755.1	penicillin-binding protein 1A	-
CFBP2533_RS05165 (CFBP2533_10430)	comM	1241198..1242256 (+)	1059	WP_043909467.1	pilus assembly protein PilM	Machinery gene
CFBP2533_RS05170 (CFBP2533_10440)	-	1242256..1243023 (+)	768	WP_168958756.1	PilN domain-containing protein	-
CFBP2533_RS05175 (CFBP2533_10450)	-	1243020..1243685 (+)	666	WP_006451354.1	type 4a pilus biogenesis protein PilO	-
CFBP2533_RS05180 (CFBP2533_10460)	-	1243682..1244215 (+)	534	WP_168958757.1	pilus assembly protein PilP	-
CFBP2533_RS05185 (CFBP2533_10470)	-	1244235..1246187 (+)	1953	WP_074058175.1	type IV pilus secretin PilQ family protein	-

Sequence

Protein

• Length: 352 a.a.
• Molecular weight: 37624.24 Da
• Isoelectric Point: 4.3882

>NTDB_id=1132413 CFBP2533_RS05165 WP_043909467.1 1241198..1242256(+) (comM) [Xanthomonas hortorum pv. pelargonii strain CFBP 2533 isolate Kemp 41]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVDHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDMEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLVAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALSRLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide

• Length: 1059 bp

>NTDB_id=1132413 CFBP2533_RS05165 WP_043909467.1 1241198..1242256(+) (comM) [Xanthomonas hortorum pv. pelargonii strain CFBP 2533 isolate Kemp 41]
GTGGGGCTTCTACCCAAGAGTCAATCGCCACTGATTGGTGTCGATATCAGTTCCACTGCGGTCAAGCTCTTGCAGCTGTC
ACGTAGCGGGAATCGTTTTCGCGTGGATCATTACGCGGTGGAACCGTTGCCGCCGAACGCGGTCGTGGAAAAGAACATCG
TCGAAGTGGAGGCGGTGGGCGAAGCCATTCGCCGCGCCATCAATCGTTCCGGCAGCAAGGCCAAGAACGCGGCTGCGGCC
GTGGCCGGGTCGGCGGTGATCACCAAGCTGATCCCGATGCCGGCCGATCTGGACGACAGCGATATGGAAGCCCAGGTCGA
ACTCGAGGCCACCAATTACATTCCGTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTTGGCCCGATGCCCAACA
GCCCGGACATGGTCCAGGTGCTGCTGGCTGCCTCGCGTTCGGAGAATGTGGAACTGCGCCAGTCCGCGCTGGAACTCGGT
GGCCTGGTTGCCAAGGTGATGGACGTAGAGGCATTTGCGGTCGAAAACGCGTTTGCCCTGGTCGCCAGCGAGCTGCCGGT
GGCCGCCGATGCAGTGGTTGCGCTGGTGGACATCGGCGCGACCATGACCACGCTGAGCGTGCTGCGTTCCGGTCGCAGTC
TGTATAGCCGCGAGCAGGTGTTCGGCGGCAAGCAGCTCACCGATGAAGTGATGCGCCGTTACGGCCTGACCTATGAAGAA
GCCGGCTTGGCCAAGCGCCAGGGCGGGTTGCCGGAGAGCTACGAGGTCGAAGTGCTGGAGCCGTTCAAAGAGGCGACGGT
GCAGCAGATCAGCCGCCTGTTGCAGTTCTTCTACGCGGGCAGCGAATTCAATCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGCGCCGCGCTGTCGCGCCTGCCGGAGATGGTGGAAGAGCAGCTCGGCGTGACCACCGTGGTCGCCAACCCGCTTGCA
CAGATGACGCTCGGCCCGAAGGTTCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCATTGATGATTGCCACCGGCCTGGC
CCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (13-351)

3D structure

• AlphaFold DB: A0A0G8KJ77

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Acinetobacter nosocomialis M2	50.852	100	0.509
pilM	Acinetobacter baumannii D1279779	50.568	100	0.506
comM	Acinetobacter baylyi ADP1	50.712	99.716	0.506
pilM	Legionella pneumophila strain ERS1305867	47.293	99.716	0.472