Detailed information NTG1132412

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: CFBP8129_RS21925
• Genome accession: NZ_LR828257
• Coordinates: 5030597..5031655 (-)
• Length: 352 a.a.
• NCBI ID: WP_043909467.1
• Uniprot ID: A0A0G8KJ77
• Organism: Xanthomonas hortorum pv. vitians strain CFBP 498
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5025597..5036655

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CFBP8129_RS21905 (CFBP498_44950)	-	5026666..5028618 (-)	1953	WP_074058175.1	type IV pilus secretin PilQ	-
CFBP8129_RS21910 (CFBP498_44960)	-	5028638..5029171 (-)	534	WP_006451353.1	pilus assembly protein PilP	-
CFBP8129_RS21915 (CFBP498_44970)	-	5029168..5029833 (-)	666	WP_006451354.1	type 4a pilus biogenesis protein PilO	-
CFBP8129_RS21920 (CFBP498_44980)	-	5029830..5030597 (-)	768	WP_074058176.1	PilN domain-containing protein	-
CFBP8129_RS21925 (CFBP498_44990)	comM	5030597..5031655 (-)	1059	WP_043909467.1	pilus assembly protein PilM	Machinery gene
CFBP8129_RS21930 (CFBP498_45000)	-	5031871..5034297 (+)	2427	WP_074058177.1	penicillin-binding protein 1A	-
CFBP8129_RS21935 (CFBP498_45010)	-	5034511..5035161 (+)	651	WP_074058178.1	hypothetical protein	-
CFBP8129_RS21940 (CFBP498_45020)	-	5035265..5036554 (-)	1290	WP_006451360.1	citrate synthase	-

Sequence

Protein

• Length: 352 a.a.
• Molecular weight: 37624.24 Da
• Isoelectric Point: 4.3882

>NTDB_id=1132412 CFBP8129_RS21925 WP_043909467.1 5030597..5031655(-) (comM) [Xanthomonas hortorum pv. vitians strain CFBP 498]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVDHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDMEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLVAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALSRLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide

• Length: 1059 bp

>NTDB_id=1132412 CFBP8129_RS21925 WP_043909467.1 5030597..5031655(-) (comM) [Xanthomonas hortorum pv. vitians strain CFBP 498]
GTGGGGCTTCTACCCAAGAGTCAATCGCCACTGATTGGTGTCGATATCAGTTCCACTGCGGTCAAGCTCTTGCAGCTGTC
ACGTAGCGGGAATCGTTTTCGCGTGGATCATTACGCGGTGGAACCGTTGCCGCCGAACGCGGTCGTGGAAAAGAACATCG
TCGAAGTGGAGGCGGTGGGCGAAGCCATTCGCCGCGCCATCAATCGTTCCGGCAGCAAGGCCAAGAACGCGGCTGCGGCC
GTGGCCGGGTCGGCGGTGATCACCAAGTTGATCCCGATGCCGGCCGATCTGGACGACAGTGATATGGAAGCCCAGGTCGA
ACTCGAGGCCACCAATTACATTCCGTACCCGATCGAGGAAGTGAATCTCGATTTCGAAGTGCTCGGCCCGATGCCCAACA
GCCCGGACATGGTCCAGGTGCTGCTGGCTGCCTCGCGTTCGGAGAATGTGGAACTGCGCCAGTCTGCGCTGGAACTCGGT
GGCCTGGTTGCCAAGGTGATGGACGTGGAGGCCTTTGCGGTCGAAAACGCGTTTGCCCTGGTCGCCAGCGAGCTGCCGGT
GGCTGCCGATGCAGTGGTTGCGCTGGTGGACATCGGCGCGACCATGACCACGCTGAGCGTGCTGCGTTCCGGTCGCAGTC
TGTATAGCCGCGAGCAGGTGTTCGGCGGCAAGCAGCTCACCGATGAAGTGATGCGCCGTTACGGCCTGACCTACGAAGAA
GCCGGCCTGGCCAAGCGTCAGGGCGGGTTGCCGGAGAGCTACGAGGTCGAAGTGCTGGAGCCGTTCAAAGAGGCGACGGT
GCAGCAGATCAGCCGCCTGTTGCAGTTCTTCTACGCGGGCAGCGAATTCAATCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGCGCCGCGCTGTCGCGCCTGCCGGAGATGGTGGAAGAGCAGCTCGGCGTGACCACCGTGGTCGCCAACCCGCTTGCA
CAGATGACGCTCGGCCCGAAGGTTCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCATTGATGATTGCCACCGGCCTGGC
CCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (13-351)

3D structure

• AlphaFold DB: A0A0G8KJ77

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Acinetobacter nosocomialis M2	50.852	100	0.509
pilM	Acinetobacter baumannii D1279779	50.568	100	0.506
comM	Acinetobacter baylyi ADP1	50.712	99.716	0.506
pilM	Legionella pneumophila strain ERS1305867	47.293	99.716	0.472