Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CFBP8129_RS17545 Genome accession   NZ_LR828257
Coordinates   4011274..4011798 (-) Length   174 a.a.
NCBI ID   WP_006448868.1    Uniprot ID   A0A6V7EHJ3
Organism   Xanthomonas hortorum pv. vitians strain CFBP 498     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4006274..4016798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFBP8129_RS17540 (CFBP498_35910) - 4008765..4010963 (-) 2199 WP_074057693.1 TonB-dependent siderophore receptor -
  CFBP8129_RS17545 (CFBP498_35920) ssb 4011274..4011798 (-) 525 WP_006448868.1 single-stranded DNA-binding protein Machinery gene
  CFBP8129_RS17550 (CFBP498_35930) - 4012072..4013070 (+) 999 WP_074057694.1 polyprenyl synthetase family protein -
  CFBP8129_RS17555 (CFBP498_35940) murD 4013272..4014681 (-) 1410 WP_074057695.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  CFBP8129_RS17560 (CFBP498_35950) murL 4014662..4016017 (-) 1356 WP_074057696.1 UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L- glutamate epimerase -
  CFBP8129_RS17565 (CFBP498_35960) - 4016014..4016472 (-) 459 WP_006448872.1 hypothetical protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18785.72 Da        Isoelectric Point: 5.3177

>NTDB_id=1132403 CFBP8129_RS17545 WP_006448868.1 4011274..4011798(-) (ssb) [Xanthomonas hortorum pv. vitians strain CFBP 498]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDREGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYIEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGGMGGDRPQRAQAPRQQQGGGGGGQGGGQDYAPRRQQPAQQQA
APPMDDFADDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=1132403 CFBP8129_RS17545 WP_006448868.1 4011274..4011798(-) (ssb) [Xanthomonas hortorum pv. vitians strain CFBP 498]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATCACCCGCGTGAGCCTGGCCACGACCAGCATGCGCAAGGACCGCGAAGGCAACAACCAGGAGCGCACCGAGTGGC
ACCGCGTGGTGTTCTTCGGAAAGCTGGGCGAAATCGCCGGTGAGTACCTGCGCAAGGGCTCGCAGGTGTACATCGAAGGC
GAGTTGCGCTACGACAAATACACCGGCCAGGACGGCGTGGAAAAGTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGTGGTGAAGGCGGCGGTGGCGGCGGCATGGGCGGCGATCGCCCGCAGCGCGCGCAGGCTCCGCGCCAGC
AGCAAGGTGGCGGTGGTGGTGGTCAGGGCGGCGGTCAGGATTACGCACCGCGTCGTCAGCAGCCGGCCCAGCAGCAGGCC
GCGCCGCCGATGGATGACTTTGCGGATGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6V7EHJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

46.703

100

0.489
  ssb Glaesserella parasuis strain SC1401

46.409

100

0.483
  ssb Neisseria meningitidis MC58

44.633

100

0.454
  ssb Neisseria gonorrhoeae MS11

44.633

100

0.454

Multiple sequence alignment