Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CFBP498_RS06925 Genome accession   NZ_LR828253
Coordinates   1671341..1671865 (+) Length   174 a.a.
NCBI ID   WP_006448868.1    Uniprot ID   A0A6V7EHJ3
Organism   Xanthomonas hortorum pv. gardneri strain CFBP 8129     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1666341..1676865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFBP498_RS06905 (CFBP8129_14060) - 1666667..1667125 (+) 459 WP_006448872.1 hypothetical protein -
  CFBP498_RS06910 (CFBP8129_14070) murL 1667122..1668477 (+) 1356 WP_006448871.1 UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L- glutamate epimerase -
  CFBP498_RS06915 (CFBP8129_14080) murD 1668458..1669867 (+) 1410 WP_043907354.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  CFBP498_RS06920 (CFBP8129_14090) - 1670069..1671067 (-) 999 WP_043907352.1 polyprenyl synthetase family protein -
  CFBP498_RS06925 (CFBP8129_14100) ssb 1671341..1671865 (+) 525 WP_006448868.1 single-stranded DNA-binding protein Machinery gene
  CFBP498_RS06930 (CFBP8129_14110) - 1672176..1674374 (+) 2199 WP_006448867.1 TonB-dependent receptor -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18785.72 Da        Isoelectric Point: 5.3177

>NTDB_id=1132387 CFBP498_RS06925 WP_006448868.1 1671341..1671865(+) (ssb) [Xanthomonas hortorum pv. gardneri strain CFBP 8129]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDREGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYIEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGGMGGDRPQRAQAPRQQQGGGGGGQGGGQDYAPRRQQPAQQQA
APPMDDFADDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=1132387 CFBP498_RS06925 WP_006448868.1 1671341..1671865(+) (ssb) [Xanthomonas hortorum pv. gardneri strain CFBP 8129]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATCACCCGCGTGAGCCTGGCCACGACCAGCATGCGCAAGGACCGCGAAGGCAACAACCAGGAGCGCACCGAGTGGC
ACCGCGTGGTGTTCTTCGGAAAGCTGGGCGAAATCGCCGGTGAGTACCTGCGCAAGGGCTCGCAGGTGTACATCGAAGGC
GAGTTGCGCTACGACAAATACACCGGCCAGGACGGCGTGGAAAAGTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGTGGTGAAGGCGGCGGTGGCGGCGGCATGGGCGGCGATCGCCCGCAGCGCGCGCAGGCTCCGCGCCAGC
AGCAAGGTGGCGGTGGTGGTGGTCAGGGCGGCGGTCAGGATTACGCACCGCGTCGTCAGCAGCCGGCCCAGCAGCAGGCC
GCGCCGCCGATGGATGACTTTGCGGATGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6V7EHJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

46.703

100

0.489
  ssb Glaesserella parasuis strain SC1401

46.409

100

0.483
  ssb Neisseria meningitidis MC58

44.633

100

0.454
  ssb Neisseria gonorrhoeae MS11

44.633

100

0.454

Multiple sequence alignment