Detailed information NTG1132378

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: CFBP498_RS05060
• Genome accession: NZ_LR828253
• Coordinates: 1198696..1199754 (+)
• Length: 352 a.a.
• NCBI ID: WP_043909467.1
• Uniprot ID: A0A0G8KJ77
• Organism: Xanthomonas hortorum pv. gardneri strain CFBP 8129
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1193696..1204754

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CFBP498_RS05040 (CFBP8129_10200)	-	1193798..1195087 (+)	1290	WP_006451360.1	citrate synthase	-
CFBP498_RS05045 (CFBP8129_10210)	-	1195191..1195763 (-)	573	WP_228996930.1	hypothetical protein	-
CFBP498_RS05050	-	1195734..1195940 (+)	207	WP_228996929.1	hypothetical protein	-
CFBP498_RS05055 (CFBP8129_10220)	-	1196054..1198480 (-)	2427	WP_006451357.1	penicillin-binding protein 1A	-
CFBP498_RS05060 (CFBP8129_10230)	comM	1198696..1199754 (+)	1059	WP_043909467.1	pilus assembly protein PilM	Machinery gene
CFBP498_RS05065 (CFBP8129_10240)	-	1199754..1200527 (+)	774	WP_006451355.1	PilN domain-containing protein	-
CFBP498_RS05070 (CFBP8129_10250)	-	1200524..1201189 (+)	666	WP_006451354.1	type 4a pilus biogenesis protein PilO	-
CFBP498_RS05075 (CFBP8129_10260)	-	1201186..1201719 (+)	534	WP_006451353.1	pilus assembly protein PilP	-
CFBP498_RS05080 (CFBP8129_10270)	-	1201739..1203649 (+)	1911	WP_043909466.1	type IV pilus secretin PilQ	-

Sequence

Protein

• Length: 352 a.a.
• Molecular weight: 37624.24 Da
• Isoelectric Point: 4.3882

>NTDB_id=1132378 CFBP498_RS05060 WP_043909467.1 1198696..1199754(+) (comM) [Xanthomonas hortorum pv. gardneri strain CFBP 8129]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVDHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDMEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLVAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALSRLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide

• Length: 1059 bp

>NTDB_id=1132378 CFBP498_RS05060 WP_043909467.1 1198696..1199754(+) (comM) [Xanthomonas hortorum pv. gardneri strain CFBP 8129]
GTGGGGCTTCTACCCAAGAGTCAATCGCCACTGATTGGTGTCGATATCAGTTCCACTGCGGTCAAGCTCTTGCAGCTGTC
ACGTAGCGGGAATCGTTTTCGCGTGGATCATTACGCGGTGGAACCGTTGCCGCCGAACGCGGTCGTGGAAAAGAACATCG
TCGAAGTGGAGGCGGTGGGCGAAGCCATTCGCCGCGCCATCAATCGTTCCGGCAGCAAGGCCAAGAACGCGGCTGCGGCC
GTGGCCGGGTCGGCGGTGATCACCAAGTTGATCCCGATGCCGGCCGATCTGGACGACAGTGATATGGAAGCCCAGGTCGA
ACTCGAGGCCACCAATTACATTCCGTACCCGATCGAGGAAGTGAATCTCGATTTCGAAGTGCTCGGCCCGATGCCCAACA
GCCCGGACATGGTCCAGGTGCTGCTGGCTGCCTCGCGTTCGGAGAATGTGGAACTGCGCCAGTCTGCGCTGGAACTCGGT
GGCCTGGTTGCCAAGGTGATGGACGTGGAGGCCTTTGCGGTCGAAAACGCGTTTGCCCTGGTCGCCAGCGAGCTGCCGGT
GGCTGCCGATGCAGTGGTTGCGCTGGTGGACATCGGCGCGACCATGACCACGCTGAGCGTGCTGCGTTCCGGTCGCAGTC
TGTATAGCCGCGAGCAGGTGTTCGGCGGCAAGCAGCTCACCGATGAAGTGATGCGCCGTTACGGCCTGACCTACGAAGAA
GCCGGCCTGGCCAAGCGTCAGGGCGGGTTGCCGGAGAGCTACGAGGTCGAAGTGCTGGAGCCGTTCAAAGAGGCGACGGT
GCAGCAGATCAGCCGCCTGTTGCAGTTCTTCTACGCGGGCAGCGAATTCAATCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGCGCCGCGCTGTCGCGCCTGCCGGAGATGGTGGAAGAGCAGCTCGGCGTGACCACCGTGGTCGCCAACCCGCTTGCA
CAGATGACGCTCGGCCCGAAGGTTCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCATTGATGATTGCCACCGGCCTGGC
CCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (13-351)

3D structure

• AlphaFold DB: A0A0G8KJ77

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Acinetobacter nosocomialis M2	50.852	100	0.509
pilM	Acinetobacter baumannii D1279779	50.568	100	0.506
comM	Acinetobacter baylyi ADP1	50.712	99.716	0.506
pilM	Legionella pneumophila strain ERS1305867	47.293	99.716	0.472