Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | BKMNNEJI_RS14970 | Genome accession | NZ_LR822061 |
| Coordinates | 2966395..2966865 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934759.1 | Uniprot ID | A0A2I7Y8V1 |
| Organism | Staphylococcus aureus isolate HU-14 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2943790..2971911 | 2966395..2966865 | within | 0 |
Gene organization within MGE regions
Location: 2943790..2971911
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BKMNNEJI_RS14820 (LJDFIFNA_02842) | groES | 2943790..2944074 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| BKMNNEJI_RS14825 (LJDFIFNA_02843) | groL | 2944150..2945766 (+) | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| BKMNNEJI_RS14830 (LJDFIFNA_02844) | - | 2946429..2947748 (+) | 1320 | WP_001557163.1 | ISL3-like element IS1181 family transposase | - |
| BKMNNEJI_RS14835 (LJDFIFNA_02845) | - | 2947826..2949133 (-) | 1308 | WP_001045079.1 | TrkH family potassium uptake protein | - |
| BKMNNEJI_RS14840 (LJDFIFNA_02846) | - | 2949577..2950800 (-) | 1224 | WP_000206625.1 | ArgE/DapE family deacylase | - |
| BKMNNEJI_RS14845 (LJDFIFNA_02847) | lukH | 2951236..2952291 (+) | 1056 | WP_000791411.1 | bi-component leukocidin LukGH subunit H | - |
| BKMNNEJI_RS14850 (LJDFIFNA_02848) | lukG | 2952313..2953329 (+) | 1017 | WP_000595392.1 | bi-component leukocidin LukGH subunit G | - |
| BKMNNEJI_RS14855 (LJDFIFNA_02849) | sph | 2953567..2954391 (-) | 825 | Protein_2902 | sphingomyelin phosphodiesterase | - |
| BKMNNEJI_RS14860 (LJDFIFNA_02850) | - | 2954448..2955485 (-) | 1038 | WP_000857198.1 | tyrosine-type recombinase/integrase | - |
| BKMNNEJI_RS14865 (LJDFIFNA_02851) | - | 2955679..2956383 (-) | 705 | WP_000440838.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| BKMNNEJI_RS14870 (LJDFIFNA_02852) | - | 2956523..2956690 (-) | 168 | WP_000705241.1 | hypothetical protein | - |
| BKMNNEJI_RS14875 (LJDFIFNA_02853) | - | 2956760..2956945 (-) | 186 | WP_000109189.1 | hypothetical protein | - |
| BKMNNEJI_RS14880 (LJDFIFNA_02854) | - | 2956942..2957088 (-) | 147 | WP_000345949.1 | hypothetical protein | - |
| BKMNNEJI_RS14885 (LJDFIFNA_02855) | - | 2957162..2958016 (-) | 855 | WP_001557601.1 | HIRAN domain-containing protein | - |
| BKMNNEJI_RS14890 (LJDFIFNA_02856) | - | 2958028..2958744 (-) | 717 | WP_001083975.1 | LexA family transcriptional regulator | - |
| BKMNNEJI_RS14895 (LJDFIFNA_02857) | - | 2958908..2959150 (+) | 243 | WP_000639923.1 | DUF739 family protein | - |
| BKMNNEJI_RS14900 (LJDFIFNA_02858) | - | 2959163..2959609 (+) | 447 | WP_000435349.1 | hypothetical protein | - |
| BKMNNEJI_RS14905 (LJDFIFNA_02859) | - | 2959624..2959764 (+) | 141 | WP_000939495.1 | hypothetical protein | - |
| BKMNNEJI_RS14910 (LJDFIFNA_02860) | - | 2959757..2959966 (-) | 210 | WP_000772137.1 | hypothetical protein | - |
| BKMNNEJI_RS14915 (LJDFIFNA_02861) | - | 2960023..2960772 (+) | 750 | WP_001148587.1 | phage antirepressor KilAC domain-containing protein | - |
| BKMNNEJI_RS14920 (LJDFIFNA_02862) | - | 2960788..2960985 (+) | 198 | WP_001148856.1 | hypothetical protein | - |
| BKMNNEJI_RS14925 (LJDFIFNA_02863) | - | 2960972..2961352 (-) | 381 | WP_000762521.1 | DUF2513 domain-containing protein | - |
| BKMNNEJI_RS14930 (LJDFIFNA_02864) | - | 2961407..2961730 (+) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| BKMNNEJI_RS14935 (LJDFIFNA_02865) | - | 2961727..2961888 (+) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| BKMNNEJI_RS14940 (LJDFIFNA_02866) | - | 2961983..2962285 (+) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| BKMNNEJI_RS14945 (LJDFIFNA_02867) | - | 2962290..2962550 (+) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| BKMNNEJI_RS14950 (LJDFIFNA_02868) | - | 2962559..2962822 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| BKMNNEJI_RS14955 (LJDFIFNA_02869) | - | 2962831..2964774 (+) | 1944 | WP_000700555.1 | AAA family ATPase | - |
| BKMNNEJI_RS14960 (LJDFIFNA_02870) | - | 2964776..2965696 (+) | 921 | WP_000138478.1 | recombinase RecT | - |
| BKMNNEJI_RS14965 (LJDFIFNA_02871) | - | 2965777..2966394 (+) | 618 | WP_078065370.1 | MBL fold metallo-hydrolase | - |
| BKMNNEJI_RS14970 (LJDFIFNA_02872) | ssbA | 2966395..2966865 (+) | 471 | WP_000934759.1 | single-stranded DNA-binding protein | Machinery gene |
| BKMNNEJI_RS14975 (LJDFIFNA_02873) | - | 2966895..2967788 (+) | 894 | WP_000148333.1 | DnaD domain protein | - |
| BKMNNEJI_RS14980 (LJDFIFNA_02874) | - | 2967795..2968013 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| BKMNNEJI_RS14985 (LJDFIFNA_02875) | - | 2968022..2968426 (+) | 405 | WP_000401979.1 | RusA family crossover junction endodeoxyribonuclease | - |
| BKMNNEJI_RS14990 (LJDFIFNA_02876) | - | 2968439..2968810 (+) | 372 | WP_000101279.1 | SA1788 family PVL leukocidin-associated protein | - |
| BKMNNEJI_RS14995 (LJDFIFNA_02877) | - | 2968810..2969067 (+) | 258 | WP_000111491.1 | DUF3310 domain-containing protein | - |
| BKMNNEJI_RS15000 (LJDFIFNA_02878) | - | 2969070..2969312 (+) | 243 | WP_000221877.1 | SAV1978 family virulence-associated passenger protein | - |
| BKMNNEJI_RS15005 (LJDFIFNA_02879) | - | 2969327..2969572 (+) | 246 | WP_001065108.1 | DUF1024 family protein | - |
| BKMNNEJI_RS15010 (LJDFIFNA_02880) | - | 2969569..2970105 (+) | 537 | WP_000185693.1 | dUTPase | - |
| BKMNNEJI_RS15015 (LJDFIFNA_02881) | - | 2970142..2970387 (+) | 246 | WP_001282071.1 | hypothetical protein | - |
| BKMNNEJI_RS15020 (LJDFIFNA_02882) | - | 2970384..2970590 (+) | 207 | WP_000195784.1 | DUF1381 domain-containing protein | - |
| BKMNNEJI_RS15025 (LJDFIFNA_02883) | rinB | 2970587..2970736 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| BKMNNEJI_RS15030 (LJDFIFNA_02884) | - | 2970736..2970936 (+) | 201 | WP_001557462.1 | DUF1514 family protein | - |
| BKMNNEJI_RS15035 (LJDFIFNA_02885) | - | 2970964..2971380 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| BKMNNEJI_RS15040 (LJDFIFNA_02886) | - | 2971612..2971911 (+) | 300 | WP_000988336.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=1132301 BKMNNEJI_RS14970 WP_000934759.1 2966395..2966865(+) (ssbA) [Staphylococcus aureus isolate HU-14]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=1132301 BKMNNEJI_RS14970 WP_000934759.1 2966395..2966865(+) (ssbA) [Staphylococcus aureus isolate HU-14]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |