Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | BKMNNEJI_RS09050 | Genome accession | NZ_LR822061 |
| Coordinates | 1762014..1762517 (-) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus isolate HU-14 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1741945..1766577 | 1762014..1762517 | within | 0 |
Gene organization within MGE regions
Location: 1741945..1766577
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BKMNNEJI_RS08910 (LJDFIFNA_01705) | - | 1741945..1742208 (+) | 264 | WP_001055897.1 | helix-turn-helix domain-containing protein | - |
| BKMNNEJI_RS08915 (LJDFIFNA_01706) | - | 1742345..1742917 (-) | 573 | WP_000769722.1 | PepSY domain-containing protein | - |
| BKMNNEJI_RS08920 (LJDFIFNA_01707) | - | 1743098..1743466 (-) | 369 | WP_000849163.1 | YxeA family protein | - |
| BKMNNEJI_RS08925 (LJDFIFNA_01708) | selX | 1743835..1744446 (-) | 612 | WP_000475325.1 | staphylococcal enterotoxin-like toxin X | - |
| BKMNNEJI_RS08930 (LJDFIFNA_RS08930) | - | 1744652..1745365 (+) | 714 | Protein_1726 | tyrosine-type recombinase/integrase | - |
| BKMNNEJI_RS08935 (LJDFIFNA_01709) | - | 1745404..1746342 (+) | 939 | WP_001817700.1 | Abi family protein | - |
| BKMNNEJI_RS15130 | - | 1747145..1747324 (-) | 180 | WP_000797954.1 | hypothetical protein | - |
| BKMNNEJI_RS08940 (LJDFIFNA_01710) | - | 1747340..1747852 (-) | 513 | WP_000813311.1 | hypothetical protein | - |
| BKMNNEJI_RS08945 (LJDFIFNA_01711) | - | 1747970..1748371 (-) | 402 | WP_000683457.1 | hypothetical protein | - |
| BKMNNEJI_RS08950 (LJDFIFNA_01712) | - | 1748549..1749517 (-) | 969 | WP_000801980.1 | Abi family protein | - |
| BKMNNEJI_RS08955 (LJDFIFNA_01713) | - | 1749794..1750363 (-) | 570 | WP_001293071.1 | terminase small subunit | - |
| BKMNNEJI_RS08960 (LJDFIFNA_RS08960) | - | 1750360..1750572 (-) | 213 | WP_001656917.1 | hypothetical protein | - |
| BKMNNEJI_RS08965 (LJDFIFNA_01715) | - | 1750704..1751231 (-) | 528 | WP_000771361.1 | spore coat protein | - |
| BKMNNEJI_RS08970 (LJDFIFNA_01716) | - | 1751284..1751937 (-) | 654 | WP_000214170.1 | hypothetical protein | - |
| BKMNNEJI_RS08975 (LJDFIFNA_01717) | - | 1751968..1752312 (-) | 345 | WP_001288442.1 | hypothetical protein | - |
| BKMNNEJI_RS08980 (LJDFIFNA_01718) | - | 1753020..1753661 (-) | 642 | WP_001019762.1 | hypothetical protein | - |
| BKMNNEJI_RS08985 (LJDFIFNA_01719) | - | 1753658..1754038 (-) | 381 | WP_000356942.1 | hypothetical protein | - |
| BKMNNEJI_RS08990 (LJDFIFNA_01720) | - | 1754348..1756057 (-) | 1710 | WP_000447468.1 | DUF927 domain-containing protein | - |
| BKMNNEJI_RS08995 (LJDFIFNA_01721) | - | 1756071..1756940 (-) | 870 | WP_001002709.1 | primase alpha helix C-terminal domain-containing protein | - |
| BKMNNEJI_RS09000 (LJDFIFNA_01722) | tscT | 1757005..1757331 (-) | 327 | WP_001103967.1 | type II toxin-antitoxin system toxin TscT | - |
| BKMNNEJI_RS09005 (LJDFIFNA_01723) | - | 1757332..1757715 (-) | 384 | WP_000403837.1 | hypothetical protein | - |
| BKMNNEJI_RS09010 (LJDFIFNA_01724) | - | 1757717..1757920 (-) | 204 | WP_001231376.1 | hypothetical protein | - |
| BKMNNEJI_RS09015 (LJDFIFNA_01725) | - | 1757887..1758060 (-) | 174 | WP_000784892.1 | hypothetical protein | - |
| BKMNNEJI_RS09020 (LJDFIFNA_01726) | - | 1758072..1758344 (-) | 273 | WP_001138305.1 | helix-turn-helix domain-containing protein | - |
| BKMNNEJI_RS09025 (LJDFIFNA_01727) | - | 1758345..1758509 (-) | 165 | WP_001611932.1 | helix-turn-helix domain-containing protein | - |
| BKMNNEJI_RS09030 (LJDFIFNA_01728) | - | 1758658..1759281 (+) | 624 | WP_000230361.1 | helix-turn-helix domain-containing protein | - |
| BKMNNEJI_RS09035 (LJDFIFNA_01729) | - | 1759442..1760656 (+) | 1215 | WP_000270135.1 | tyrosine-type recombinase/integrase | - |
| BKMNNEJI_RS09040 (LJDFIFNA_01730) | - | 1760769..1761488 (+) | 720 | WP_000400841.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| BKMNNEJI_RS09045 (LJDFIFNA_01731) | rpsR | 1761720..1761962 (-) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| BKMNNEJI_RS09050 (LJDFIFNA_01732) | ssbA | 1762014..1762517 (-) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| BKMNNEJI_RS09055 (LJDFIFNA_01733) | rpsF | 1762538..1762834 (-) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| BKMNNEJI_RS09060 (LJDFIFNA_01734) | - | 1763078..1763269 (+) | 192 | WP_001052484.1 | hypothetical protein | - |
| BKMNNEJI_RS09065 (LJDFIFNA_01735) | ychF | 1763355..1764452 (-) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| BKMNNEJI_RS09070 (LJDFIFNA_01736) | - | 1764464..1764667 (-) | 204 | WP_000157348.1 | DUF951 domain-containing protein | - |
| BKMNNEJI_RS09075 (LJDFIFNA_01737) | - | 1764697..1765578 (-) | 882 | WP_000373073.1 | mechanosensitive ion channel family protein | - |
| BKMNNEJI_RS09080 (LJDFIFNA_01738) | - | 1765732..1766577 (-) | 846 | WP_001557587.1 | ParB/RepB/Spo0J family partition protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=1132290 BKMNNEJI_RS09050 WP_000934799.1 1762014..1762517(-) (ssbA) [Staphylococcus aureus isolate HU-14]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=1132290 BKMNNEJI_RS09050 WP_000934799.1 1762014..1762517(-) (ssbA) [Staphylococcus aureus isolate HU-14]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |