Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | LJDFIFNA_RS14990 | Genome accession | NZ_LR822060 |
| Coordinates | 2965060..2965530 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934759.1 | Uniprot ID | A0A2I7Y8V1 |
| Organism | Staphylococcus aureus isolate P3.1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2942455..2970576 | 2965060..2965530 | within | 0 |
Gene organization within MGE regions
Location: 2942455..2970576
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LJDFIFNA_RS14840 (BKMNNEJI_02841) | groES | 2942455..2942739 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| LJDFIFNA_RS14845 (BKMNNEJI_02842) | groL | 2942815..2944431 (+) | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| LJDFIFNA_RS14850 (BKMNNEJI_02843) | - | 2945094..2946413 (+) | 1320 | WP_001557163.1 | ISL3-like element IS1181 family transposase | - |
| LJDFIFNA_RS14855 (BKMNNEJI_02844) | - | 2946491..2947798 (-) | 1308 | WP_001045079.1 | TrkH family potassium uptake protein | - |
| LJDFIFNA_RS14860 (BKMNNEJI_02845) | - | 2948242..2949465 (-) | 1224 | WP_000206625.1 | ArgE/DapE family deacylase | - |
| LJDFIFNA_RS14865 (BKMNNEJI_02846) | lukH | 2949901..2950956 (+) | 1056 | WP_000791411.1 | bi-component leukocidin LukGH subunit H | - |
| LJDFIFNA_RS14870 (BKMNNEJI_02847) | lukG | 2950978..2951994 (+) | 1017 | WP_000595392.1 | bi-component leukocidin LukGH subunit G | - |
| LJDFIFNA_RS14875 (BKMNNEJI_02848) | sph | 2952232..2953056 (-) | 825 | Protein_2901 | sphingomyelin phosphodiesterase | - |
| LJDFIFNA_RS14880 (BKMNNEJI_02849) | - | 2953113..2954150 (-) | 1038 | WP_000857198.1 | tyrosine-type recombinase/integrase | - |
| LJDFIFNA_RS14885 (BKMNNEJI_02850) | - | 2954344..2955048 (-) | 705 | WP_000440838.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| LJDFIFNA_RS14890 (BKMNNEJI_02851) | - | 2955188..2955355 (-) | 168 | WP_000705241.1 | hypothetical protein | - |
| LJDFIFNA_RS14895 (BKMNNEJI_02852) | - | 2955425..2955610 (-) | 186 | WP_000109189.1 | hypothetical protein | - |
| LJDFIFNA_RS14900 (BKMNNEJI_02853) | - | 2955607..2955753 (-) | 147 | WP_000345949.1 | hypothetical protein | - |
| LJDFIFNA_RS14905 (BKMNNEJI_02854) | - | 2955827..2956681 (-) | 855 | WP_001557601.1 | HIRAN domain-containing protein | - |
| LJDFIFNA_RS14910 (BKMNNEJI_02855) | - | 2956693..2957409 (-) | 717 | WP_001083975.1 | LexA family transcriptional regulator | - |
| LJDFIFNA_RS14915 (BKMNNEJI_02856) | - | 2957573..2957815 (+) | 243 | WP_000639923.1 | DUF739 family protein | - |
| LJDFIFNA_RS14920 (BKMNNEJI_02857) | - | 2957828..2958274 (+) | 447 | WP_000435349.1 | hypothetical protein | - |
| LJDFIFNA_RS14925 (BKMNNEJI_02858) | - | 2958289..2958429 (+) | 141 | WP_000939495.1 | hypothetical protein | - |
| LJDFIFNA_RS14930 (BKMNNEJI_02859) | - | 2958422..2958631 (-) | 210 | WP_000772137.1 | hypothetical protein | - |
| LJDFIFNA_RS14935 (BKMNNEJI_02860) | - | 2958688..2959437 (+) | 750 | WP_001148587.1 | phage antirepressor KilAC domain-containing protein | - |
| LJDFIFNA_RS14940 (BKMNNEJI_02861) | - | 2959453..2959650 (+) | 198 | WP_001148856.1 | hypothetical protein | - |
| LJDFIFNA_RS14945 (BKMNNEJI_02862) | - | 2959637..2960017 (-) | 381 | WP_000762521.1 | DUF2513 domain-containing protein | - |
| LJDFIFNA_RS14950 (BKMNNEJI_02863) | - | 2960072..2960395 (+) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| LJDFIFNA_RS14955 (BKMNNEJI_02864) | - | 2960392..2960553 (+) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| LJDFIFNA_RS14960 (BKMNNEJI_02865) | - | 2960648..2960950 (+) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| LJDFIFNA_RS14965 (BKMNNEJI_02866) | - | 2960955..2961215 (+) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| LJDFIFNA_RS14970 (BKMNNEJI_02867) | - | 2961224..2961487 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| LJDFIFNA_RS14975 (BKMNNEJI_02868) | - | 2961496..2963439 (+) | 1944 | WP_000700555.1 | AAA family ATPase | - |
| LJDFIFNA_RS14980 (BKMNNEJI_02869) | - | 2963441..2964361 (+) | 921 | WP_000138478.1 | recombinase RecT | - |
| LJDFIFNA_RS14985 (BKMNNEJI_02870) | - | 2964442..2965059 (+) | 618 | WP_078065370.1 | MBL fold metallo-hydrolase | - |
| LJDFIFNA_RS14990 (BKMNNEJI_02871) | ssbA | 2965060..2965530 (+) | 471 | WP_000934759.1 | single-stranded DNA-binding protein | Machinery gene |
| LJDFIFNA_RS14995 (BKMNNEJI_02872) | - | 2965560..2966453 (+) | 894 | WP_000148333.1 | DnaD domain protein | - |
| LJDFIFNA_RS15000 (BKMNNEJI_02873) | - | 2966460..2966678 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| LJDFIFNA_RS15005 (BKMNNEJI_02874) | - | 2966687..2967091 (+) | 405 | WP_000401979.1 | RusA family crossover junction endodeoxyribonuclease | - |
| LJDFIFNA_RS15010 (BKMNNEJI_02875) | - | 2967104..2967475 (+) | 372 | WP_000101279.1 | SA1788 family PVL leukocidin-associated protein | - |
| LJDFIFNA_RS15015 (BKMNNEJI_02876) | - | 2967475..2967732 (+) | 258 | WP_000111491.1 | DUF3310 domain-containing protein | - |
| LJDFIFNA_RS15020 (BKMNNEJI_02877) | - | 2967735..2967977 (+) | 243 | WP_000221877.1 | SAV1978 family virulence-associated passenger protein | - |
| LJDFIFNA_RS15025 (BKMNNEJI_02878) | - | 2967992..2968237 (+) | 246 | WP_001065108.1 | DUF1024 family protein | - |
| LJDFIFNA_RS15030 (BKMNNEJI_02879) | - | 2968234..2968770 (+) | 537 | WP_000185693.1 | dUTPase | - |
| LJDFIFNA_RS15035 (BKMNNEJI_02880) | - | 2968807..2969052 (+) | 246 | WP_001282071.1 | hypothetical protein | - |
| LJDFIFNA_RS15040 (BKMNNEJI_02881) | - | 2969049..2969255 (+) | 207 | WP_000195784.1 | DUF1381 domain-containing protein | - |
| LJDFIFNA_RS15045 (BKMNNEJI_02882) | rinB | 2969252..2969401 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| LJDFIFNA_RS15050 (BKMNNEJI_02883) | - | 2969401..2969601 (+) | 201 | WP_001557462.1 | DUF1514 family protein | - |
| LJDFIFNA_RS15055 (BKMNNEJI_02884) | - | 2969629..2970045 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| LJDFIFNA_RS15060 (BKMNNEJI_02885) | - | 2970277..2970576 (+) | 300 | WP_000988336.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=1132256 LJDFIFNA_RS14990 WP_000934759.1 2965060..2965530(+) (ssbA) [Staphylococcus aureus isolate P3.1]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=1132256 LJDFIFNA_RS14990 WP_000934759.1 2965060..2965530(+) (ssbA) [Staphylococcus aureus isolate P3.1]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |