Detailed information NTG1132145

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: H1W86_RS08540
• Genome accession: NZ_LR822042
• Coordinates: 1656141..1656578 (-)
• Length: 145 a.a.
• NCBI ID: WP_011681686.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus isolate STH_CIRM_1358
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1651141..1661578

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H1W86_RS08505 (STHERMO_1887)	-	1651205..1651867 (-)	663	WP_011681679.1	CPBP family intramembrane glutamic endopeptidase	-
H1W86_RS08510 (STHERMO_1888)	-	1651964..1652407 (-)	444	WP_011681680.1	hypothetical protein	-
H1W86_RS09880 (STHERMO_1889)	-	1652481..1652906 (-)	426	WP_014608739.1	CPBP family intramembrane glutamic endopeptidase	-
H1W86_RS09885 (STHERMO_1890)	-	1652863..1653138 (-)	276	WP_011681681.1	hypothetical protein	-
H1W86_RS08520 (STHERMO_1891)	-	1653150..1653347 (-)	198	WP_011681682.1	helix-turn-helix transcriptional regulator	-
H1W86_RS08525 (STHERMO_1892)	-	1653596..1654789 (-)	1194	WP_014608740.1	acetate kinase	-
H1W86_RS08530 (STHERMO_1893)	comYH	1654845..1655801 (-)	957	WP_180479534.1	class I SAM-dependent methyltransferase	Machinery gene
H1W86_RS08535 (STHERMO_1894)	comGG	1655846..1656163 (-)	318	WP_082309152.1	competence type IV pilus minor pilin ComGG	-
H1W86_RS08540 (STHERMO_1895)	comYF	1656141..1656578 (-)	438	WP_011681686.1	competence type IV pilus minor pilin ComGF	Machinery gene
H1W86_RS08545 (STHERMO_1896)	comGE	1656562..1656855 (-)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
H1W86_RS08550 (STHERMO_1897)	comYD	1656827..1657255 (-)	429	WP_180479736.1	competence type IV pilus minor pilin ComGD	Machinery gene
H1W86_RS08555 (STHERMO_1898)	comYC	1657215..1657541 (-)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
H1W86_RS08560 (STHERMO_1899)	comYB	1657538..1658638 (-)	1101	WP_120764773.1	competence type IV pilus assembly protein ComGB	Machinery gene
H1W86_RS08565 (STHERMO_1900)	comGA/cglA/cilD	1658520..1659461 (-)	942	WP_071417491.1	competence type IV pilus ATPase ComGA	Machinery gene
H1W86_RS08570 (STHERMO_1901)	-	1659542..1659904 (-)	363	WP_014622006.1	DUF1033 family protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16375.85 Da
• Isoelectric Point: 8.4500

>NTDB_id=1132145 H1W86_RS08540 WP_011681686.1 1656141..1656578(-) (comYF) [Streptococcus thermophilus isolate STH_CIRM_1358]
MYLSSKLRAFTLLECLVALLVIAGSVQVYQGLTTVLVSNVKQVRQQENQDWLLFVQQMEAELEGCQLVKVEGNKLYVKQD
NQDLAFGLSSASDFRKTNADGRGYQPMLFDVKSSKVSQKNQIVTIQVTLKNELQRSFVYAFEKTG

Nucleotide

• Length: 438 bp

>NTDB_id=1132145 H1W86_RS08540 WP_011681686.1 1656141..1656578(-) (comYF) [Streptococcus thermophilus isolate STH_CIRM_1358]
ATGTATCTAAGCAGTAAGCTGCGTGCCTTTACCCTCTTGGAATGTCTAGTGGCCTTGTTGGTCATTGCTGGCTCAGTTCA
AGTTTATCAAGGGTTAACCACTGTACTTGTGAGTAATGTTAAGCAGGTAAGACAACAAGAAAACCAAGATTGGCTTCTAT
TTGTTCAACAAATGGAGGCAGAATTAGAAGGATGTCAGTTGGTCAAGGTAGAGGGGAACAAACTCTATGTCAAGCAGGAT
AATCAAGACTTGGCTTTTGGTCTTTCAAGTGCCTCTGATTTTCGAAAAACAAATGCTGATGGTCGAGGTTATCAACCAAT
GCTTTTCGATGTCAAATCTAGTAAGGTAAGTCAAAAGAACCAGATAGTTACCATCCAAGTGACTCTTAAAAATGAACTAC
AAAGGAGTTTTGTTTATGCTTTTGAAAAAACAGGTTAG

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (39-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	58.156	97.241	0.566
comYF	Streptococcus mutans UA159	57.447	97.241	0.559
comGF/cglF	Streptococcus pneumoniae D39	49.286	96.552	0.476
comGF/cglF	Streptococcus pneumoniae Rx1	49.286	96.552	0.476
comGF/cglF	Streptococcus pneumoniae R6	49.286	96.552	0.476
comGF/cglF	Streptococcus pneumoniae TIGR4	49.286	96.552	0.476
comGF/cglF	Streptococcus mitis NCTC 12261	47.518	97.241	0.462
comGF/cglF	Streptococcus mitis SK321	46.809	97.241	0.455
comGF	Lactococcus lactis subsp. cremoris KW2	45.324	95.862	0.434