Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   H1W86_RS08530 Genome accession   NZ_LR822042
Coordinates   1654845..1655801 (-) Length   318 a.a.
NCBI ID   WP_180479534.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_1358     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1649845..1660801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W86_RS08500 (STHERMO_1886) proC 1650405..1651175 (+) 771 WP_011226616.1 pyrroline-5-carboxylate reductase -
  H1W86_RS08505 (STHERMO_1887) - 1651205..1651867 (-) 663 WP_011681679.1 CPBP family intramembrane glutamic endopeptidase -
  H1W86_RS08510 (STHERMO_1888) - 1651964..1652407 (-) 444 WP_011681680.1 hypothetical protein -
  H1W86_RS09880 (STHERMO_1889) - 1652481..1652906 (-) 426 WP_014608739.1 CPBP family intramembrane glutamic endopeptidase -
  H1W86_RS09885 (STHERMO_1890) - 1652863..1653138 (-) 276 WP_011681681.1 hypothetical protein -
  H1W86_RS08520 (STHERMO_1891) - 1653150..1653347 (-) 198 WP_011681682.1 helix-turn-helix transcriptional regulator -
  H1W86_RS08525 (STHERMO_1892) - 1653596..1654789 (-) 1194 WP_014608740.1 acetate kinase -
  H1W86_RS08530 (STHERMO_1893) comYH 1654845..1655801 (-) 957 WP_180479534.1 class I SAM-dependent methyltransferase Machinery gene
  H1W86_RS08535 (STHERMO_1894) comGG 1655846..1656163 (-) 318 WP_082309152.1 competence type IV pilus minor pilin ComGG -
  H1W86_RS08540 (STHERMO_1895) comYF 1656141..1656578 (-) 438 WP_011681686.1 competence type IV pilus minor pilin ComGF Machinery gene
  H1W86_RS08545 (STHERMO_1896) comGE 1656562..1656855 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  H1W86_RS08550 (STHERMO_1897) comYD 1656827..1657255 (-) 429 WP_180479736.1 competence type IV pilus minor pilin ComGD Machinery gene
  H1W86_RS08555 (STHERMO_1898) comYC 1657215..1657541 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  H1W86_RS08560 (STHERMO_1899) comYB 1657538..1658638 (-) 1101 WP_120764773.1 competence type IV pilus assembly protein ComGB Machinery gene
  H1W86_RS08565 (STHERMO_1900) comGA/cglA/cilD 1658520..1659461 (-) 942 WP_071417491.1 competence type IV pilus ATPase ComGA Machinery gene
  H1W86_RS08570 (STHERMO_1901) - 1659542..1659904 (-) 363 WP_014622006.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35869.02 Da        Isoelectric Point: 4.7123

>NTDB_id=1132144 H1W86_RS08530 WP_180479534.1 1654845..1655801(-) (comYH) [Streptococcus thermophilus isolate STH_CIRM_1358]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
VVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDPLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLQNPRILKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=1132144 H1W86_RS08530 WP_180479534.1 1654845..1655801(-) (comYH) [Streptococcus thermophilus isolate STH_CIRM_1358]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAACG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GTGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCCGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGATCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.889

99.057

0.682
  comYH Streptococcus mutans UA140

68.889

99.057

0.682

Multiple sequence alignment