Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   H1W80_RS08425 Genome accession   NZ_LR822040
Coordinates   1630536..1631492 (-) Length   318 a.a.
NCBI ID   WP_011226622.1    Uniprot ID   A0A8D6XRE9
Organism   Streptococcus thermophilus isolate STH_CIRM_1125     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1625536..1636492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W80_RS08395 (STHERMO_1895) proC 1626096..1626866 (+) 771 WP_011226616.1 pyrroline-5-carboxylate reductase -
  H1W80_RS08400 (STHERMO_1896) - 1626896..1627558 (-) 663 WP_023909970.1 CPBP family intramembrane glutamic endopeptidase -
  H1W80_RS08405 (STHERMO_1897) - 1627655..1628098 (-) 444 WP_180473351.1 CAAX protease -
  H1W80_RS09720 (STHERMO_1898) - 1628172..1628597 (-) 426 WP_232086518.1 CPBP family intramembrane glutamic endopeptidase -
  H1W80_RS09725 (STHERMO_1899) - 1628554..1628829 (-) 276 WP_232086519.1 CAAX protease -
  H1W80_RS08415 (STHERMO_1900) - 1628841..1629038 (-) 198 WP_002885716.1 helix-turn-helix transcriptional regulator -
  H1W80_RS08420 (STHERMO_1901) - 1629287..1630480 (-) 1194 WP_180473352.1 acetate kinase -
  H1W80_RS08425 (STHERMO_1902) comYH 1630536..1631492 (-) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  H1W80_RS08430 (STHERMO_1903) comGG 1631537..1631854 (-) 318 WP_002952035.1 competence type IV pilus minor pilin ComGG -
  H1W80_RS08435 (STHERMO_1904) comYF 1631832..1632269 (-) 438 WP_082309153.1 competence type IV pilus minor pilin ComGF Machinery gene
  H1W80_RS08440 (STHERMO_1905) comGE 1632253..1632546 (-) 294 WP_180473353.1 competence type IV pilus minor pilin ComGE -
  H1W80_RS08445 (STHERMO_1906) comYD 1632518..1632946 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  H1W80_RS08450 (STHERMO_1907) comYC 1632906..1633232 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  H1W80_RS08455 (STHERMO_1908) comYB 1633229..1634329 (-) 1101 WP_180473354.1 competence type IV pilus assembly protein ComGB Machinery gene
  H1W80_RS08460 (STHERMO_1909) comGA/cglA/cilD 1634211..1635152 (-) 942 WP_022096896.1 competence type IV pilus ATPase ComGA Machinery gene
  H1W80_RS08465 (STHERMO_1910) - 1635233..1635595 (-) 363 WP_014608746.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35857.00 Da        Isoelectric Point: 4.7123

>NTDB_id=1132022 H1W80_RS08425 WP_011226622.1 1630536..1631492(-) (comYH) [Streptococcus thermophilus isolate STH_CIRM_1125]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLQNPRILKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=1132022 H1W80_RS08425 WP_011226622.1 1630536..1631492(-) (comYH) [Streptococcus thermophilus isolate STH_CIRM_1125]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAACG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAATATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGATCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.889

99.057

0.682
  comYH Streptococcus mutans UA140

68.889

99.057

0.682

Multiple sequence alignment