Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   H1W80_RS06505 Genome accession   NZ_LR822040
Coordinates   1246058..1247551 (-) Length   497 a.a.
NCBI ID   WP_180473282.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_1125     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1241058..1252551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W80_RS06475 (STHERMO_1447) - 1241188..1241565 (+) 378 WP_022496273.1 GntR family transcriptional regulator -
  H1W80_RS06480 (STHERMO_1448) - 1241570..1242268 (+) 699 WP_180473280.1 ABC transporter ATP-binding protein -
  H1W80_RS06485 (STHERMO_1449) - 1242280..1243065 (+) 786 WP_002951425.1 hypothetical protein -
  H1W80_RS06490 (STHERMO_1450) amiF 1243115..1244044 (-) 930 WP_002951426.1 ATP-binding cassette domain-containing protein Regulator
  H1W80_RS06495 (STHERMO_1451) amiE 1244037..1245122 (-) 1086 WP_180473281.1 ABC transporter ATP-binding protein Regulator
  H1W80_RS06500 (STHERMO_1452) amiD 1245132..1246058 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  H1W80_RS06505 (STHERMO_1453) amiC 1246058..1247551 (-) 1494 WP_180473282.1 ABC transporter permease Regulator
  H1W80_RS06510 (STHERMO_1454) amiA 1247613..1249580 (-) 1968 WP_087010065.1 peptide ABC transporter substrate-binding protein Regulator
  H1W80_RS06515 (STHERMO_1455) - 1249965..1251166 (+) 1202 Protein_1224 ISL3 family transposase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55735.62 Da        Isoelectric Point: 10.0618

>NTDB_id=1132009 H1W80_RS06505 WP_180473282.1 1246058..1247551(-) (amiC) [Streptococcus thermophilus isolate STH_CIRM_1125]
MKKYILLRTLRSLLSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKANYENTIYERLGYIDYYDTKELQEKAS
SLDKSVTTKPTKENKAIYQKYVESLGRGWRLHQFKQSKQFYATRDVPVLERVFGFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNGQFPFVHQNFVKMNLGTSYPTYAEQGVLDVITQGQGQTKSSVVNFPTGKKISSV
DIYSRTYKSPSQADARDRSYYGNDPYTATKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMALFKNTIFDSVSTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHILKNAMVSLVSGIPASIVGVITGATLTETIFAYPGMGKMLIDSVRASNNAMVVGLVFIFTALSIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=1132009 H1W80_RS06505 WP_180473282.1 1246058..1247551(-) (amiC) [Streptococcus thermophilus isolate STH_CIRM_1125]
ATGAAAAAATACATTTTATTGAGAACACTCCGTTCTCTATTGTCAATATTTGTCGTGACGGCTTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAAGACCCAAACTACAACAAGATTGCTAAGACAGCTGATTCTAAGG
CTAACTATGAAAATACAATCTATGAACGTTTGGGTTACATTGATTACTATGACACCAAGGAGTTGCAGGAGAAAGCTAGC
TCCCTTGATAAGTCAGTAACCACTAAGCCAACAAAAGAAAATAAGGCTATCTACCAAAAATATGTGGAAAGTTTAGGACG
TGGTTGGCGTTTGCATCAGTTCAAGCAAAGTAAACAATTCTATGCGACACGTGATGTGCCAGTGCTTGAACGTGTGTTTG
GCTTCTATACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTATATC
CGTATTGAAAATGACCCAGCTATCGGTTGGTCAGTTGTTGGTTCAGGGACTAAGCATAAATATTTGCTTTACTTTAATGG
TCAGTTCCCATTTGTTCACCAAAACTTTGTGAAGATGAACCTTGGTACATCTTACCCAACTTATGCTGAGCAAGGTGTTC
TTGATGTTATTACACAAGGCCAAGGACAGACAAAAAGCTCTGTGGTTAACTTCCCTACTGGTAAGAAAATATCTTCAGTA
GATATCTACTCTCGTACTTATAAATCACCAAGTCAGGCTGACGCTAGAGATCGTTCTTACTATGGAAATGATCCATACAC
AGCTACCAAGAGTCGTTATCAATACCCATCAATGGTGACAAGTTCTGCCATTGCAGGTTTGATTGGTTTGGTCTTGTCTT
ATGCTTTGGCAATTCCATTGGGATCATACATGGCACTCTTTAAAAACACAATCTTTGATAGTGTGTCAACAGGTGTCTTG
ACTTTCTTGCTTTCACTACCAACCATCGCCTTGGTTTATATCATTCGTTTGATTGGTTCTGAGATTGGTCTTCCAGATTC
CTTCCCTATCTTGGGTGCAGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCGATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTTGTTCGCTTTGCACGTGCCAAAGGGTTGTCA
GAACAAGAAATTTCAAATAAACACATTTTAAAAAACGCTATGGTTTCCTTGGTTTCAGGGATCCCAGCATCTATTGTTGG
GGTTATCACAGGGGCAACCTTGACAGAAACAATCTTCGCCTACCCTGGTATGGGTAAAATGTTGATCGATTCTGTTCGTG
CTTCTAATAATGCTATGGTCGTTGGGCTGGTATTTATTTTTACAGCTCTCTCCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATTATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus thermophilus LMG 18311

99.598

100

0.996
  amiC Streptococcus thermophilus LMD-9

99.195

100

0.992
  amiC Streptococcus salivarius strain HSISS4

96.982

100

0.97

Multiple sequence alignment