Detailed information NTG1132008

Bioinformatically predicted

Overview

• Name: amiD
• Type: Regulator
• Locus tag: H1W80_RS06500
• Genome accession: NZ_LR822040
• Coordinates: 1245132..1246058 (-)
• Length: 308 a.a.
• NCBI ID: WP_002946409.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus isolate STH_CIRM_1125
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1240132..1251058

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H1W80_RS06470 (STHERMO_1446)	-	1240211..1241005 (-)	795	WP_180473279.1	HAD-IIB family hydrolase	-
H1W80_RS06475 (STHERMO_1447)	-	1241188..1241565 (+)	378	WP_022496273.1	GntR family transcriptional regulator	-
H1W80_RS06480 (STHERMO_1448)	-	1241570..1242268 (+)	699	WP_180473280.1	ABC transporter ATP-binding protein	-
H1W80_RS06485 (STHERMO_1449)	-	1242280..1243065 (+)	786	WP_002951425.1	hypothetical protein	-
H1W80_RS06490 (STHERMO_1450)	amiF	1243115..1244044 (-)	930	WP_002951426.1	ATP-binding cassette domain-containing protein	Regulator
H1W80_RS06495 (STHERMO_1451)	amiE	1244037..1245122 (-)	1086	WP_180473281.1	ABC transporter ATP-binding protein	Regulator
H1W80_RS06500 (STHERMO_1452)	amiD	1245132..1246058 (-)	927	WP_002946409.1	oligopeptide ABC transporter permease OppC	Regulator
H1W80_RS06505 (STHERMO_1453)	amiC	1246058..1247551 (-)	1494	WP_180473282.1	ABC transporter permease	Regulator
H1W80_RS06510 (STHERMO_1454)	amiA	1247613..1249580 (-)	1968	WP_087010065.1	peptide ABC transporter substrate-binding protein	Regulator

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 34694.85 Da
• Isoelectric Point: 9.7054

>NTDB_id=1132008 H1W80_RS06500 WP_002946409.1 1245132..1246058(-) (amiD) [Streptococcus thermophilus isolate STH_CIRM_1125]
MASIDKSKFQFVKRDDFASETIDAPSYSYWKSVMRQFFKKKSTVVMLGILITIILMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDGNGKSLFDSVWFGARNSILIAVIATFLNVIIGLLVGAVWGISKTFDMIMMEIYNIISNIPSLLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRNLGTPTAKIVIKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR

Nucleotide

• Length: 927 bp

>NTDB_id=1132008 H1W80_RS06500 WP_002946409.1 1245132..1246058(-) (amiD) [Streptococcus thermophilus isolate STH_CIRM_1125]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCACCGTCTTA
CTCATACTGGAAATCAGTGATGCGTCAATTTTTTAAAAAGAAATCAACAGTTGTAATGTTGGGAATCTTGATTACTATTA
TTTTAATGAGTTTCATCTACCCAATGTTTTCTAAATTTGACTTCAATGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAACGCTCAATACTGGTTCGGTACTGACGGTAATGGTAAGTCTCTATTTGACAGTGTTTGGTTTGGGGC
TCGTAATTCTATCCTTATCGCTGTTATCGCTACCTTCCTGAATGTTATAATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCCTCTCTCCTTGTGGTTATCGTC
TTGACTTACTCATTAGGTGCTGGTTTCTGGAATATGATTTTTGCCATGACCGTAACAGGTTGGATCGGTATTGCCTATAC
AATCCGTATTCAAATCATGCGTTATCGTGATTTGGAGTATAACTTGGCTTCTCGCAATTTGGGAACACCAACGGCTAAGA
TTGTGATTAAAAATATCATGCCACAACTTGTGTCAGTTATTGTAACCATGGCTAGTCAACTTTTGCCAGGATTTATCTCT
TATGAGGCCTTCCTTTCATACTTTGGTTTGGGTCTTCCTGTTACTACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCCTATCTCTTCTGGATTCCATTGACTACCTTGATTCTTGTTTCTCTTGCCCTCTTTATTG
TTGGTCAAAACTTAGCGGATGCTAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterproScan.

• N-terminal TM domain of oligopeptide transport permease C (OppC_N) (28-71)

• Binding-protein-dependent transport system inner membrane component (BPD_transp_1) (125-306)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiD	Streptococcus thermophilus LMG 18311	100	100	1
amiD	Streptococcus thermophilus LMD-9	100	100	1
amiD	Streptococcus salivarius strain HSISS4	96.429	100	0.964