Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   H1W80_RS06490 Genome accession   NZ_LR822040
Coordinates   1243115..1244044 (-) Length   309 a.a.
NCBI ID   WP_002951426.1    Uniprot ID   A0A7U7CIU5
Organism   Streptococcus thermophilus isolate STH_CIRM_1125     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1238115..1249044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W80_RS06465 (STHERMO_1445) - 1239403..1240218 (-) 816 WP_180473278.1 Cof-type HAD-IIB family hydrolase -
  H1W80_RS06470 (STHERMO_1446) - 1240211..1241005 (-) 795 WP_180473279.1 HAD-IIB family hydrolase -
  H1W80_RS06475 (STHERMO_1447) - 1241188..1241565 (+) 378 WP_022496273.1 GntR family transcriptional regulator -
  H1W80_RS06480 (STHERMO_1448) - 1241570..1242268 (+) 699 WP_180473280.1 ABC transporter ATP-binding protein -
  H1W80_RS06485 (STHERMO_1449) - 1242280..1243065 (+) 786 WP_002951425.1 hypothetical protein -
  H1W80_RS06490 (STHERMO_1450) amiF 1243115..1244044 (-) 930 WP_002951426.1 ATP-binding cassette domain-containing protein Regulator
  H1W80_RS06495 (STHERMO_1451) amiE 1244037..1245122 (-) 1086 WP_180473281.1 ABC transporter ATP-binding protein Regulator
  H1W80_RS06500 (STHERMO_1452) amiD 1245132..1246058 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  H1W80_RS06505 (STHERMO_1453) amiC 1246058..1247551 (-) 1494 WP_180473282.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35171.28 Da        Isoelectric Point: 6.5989

>NTDB_id=1132006 H1W80_RS06490 WP_002951426.1 1243115..1244044(-) (amiF) [Streptococcus thermophilus isolate STH_CIRM_1125]
MPEKLVEVKDVEISFGEGRKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGYLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLYNFHLYKDEEERKAKIKEIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMVEVRPGHFVWGNKTEIETYRKEQSK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=1132006 H1W80_RS06490 WP_002951426.1 1243115..1244044(-) (amiF) [Streptococcus thermophilus isolate STH_CIRM_1125]
ATGCCTGAGAAATTAGTTGAAGTAAAAGATGTGGAAATTTCCTTCGGCGAAGGAAGAAAGAAGTTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTCTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACGACTATTGGACGTG
CCATTATCGGTTTAAATGACACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAGATCAATGGATACTTATCTCACTCT
GAGAAAAACGACCTTATCCGTCGTATTCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCGACAGTCGA
TTATATCTTGTCTGAGGGCTTGTACAATTTCCATCTTTATAAAGATGAGGAAGAACGTAAGGCTAAAATCAAGGAAATCA
TCAAAGAAGTAGGACTTCTTGAGGAGCACTTAACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATCGGG
ATTGCGCGTTCTTTGGTCATGCAGCCTGATTTGGTTATCGCTGATGAACCAATCTCAGCCCTTGACGTGTCAGTTCGTGC
CCAAGTTTTGAATTTGCTTAAGAAATTCCAAAAAGAGTTGGGGTTAACCTATCTCTTTATCGCTCACGATTTGTCAGTGG
TCCGTTTCATTTCTGACCGTATCGCTGTTATCTATAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAGCTCTACAAC
AATCCTATCCATCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGATCCAATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACACGACTATTCGGTTGATAAACCAGAAATGGTGGAAGTACGCCCAGGTCACTTCGTTT
GGGGTAACAAGACAGAAATTGAGACTTATCGTAAAGAACAAAGTAAGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(26-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7CIU5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

100

100

1
  amiF Streptococcus thermophilus LMD-9

99.676

100

0.997
  amiF Streptococcus salivarius strain HSISS4

98.058

100

0.981

Multiple sequence alignment