Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   H1W91_RS08880 Genome accession   NZ_LR822032
Coordinates   1706610..1707566 (-) Length   318 a.a.
NCBI ID   WP_180477178.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_1050     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1701610..1712566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W91_RS08850 (STHERMO_1960) proC 1702172..1702942 (+) 771 WP_011226616.1 pyrroline-5-carboxylate reductase -
  H1W91_RS08855 (STHERMO_1961) - 1702972..1703634 (-) 663 WP_180477177.1 CPBP family intramembrane glutamic endopeptidase -
  H1W91_RS08860 (STHERMO_1962) - 1703731..1704173 (-) 443 Protein_1691 CAAX protease -
  H1W91_RS10205 (STHERMO_1963) - 1704247..1704672 (-) 426 WP_111679733.1 CPBP family intramembrane glutamic endopeptidase -
  H1W91_RS08870 (STHERMO_1965) - 1704915..1705112 (-) 198 WP_002885716.1 helix-turn-helix transcriptional regulator -
  H1W91_RS08875 (STHERMO_1966) - 1705361..1706554 (-) 1194 WP_014608740.1 acetate kinase -
  H1W91_RS08880 (STHERMO_1967) comYH 1706610..1707566 (-) 957 WP_180477178.1 class I SAM-dependent methyltransferase Machinery gene
  H1W91_RS08885 (STHERMO_1968) comGG 1707611..1707928 (-) 318 WP_180477179.1 competence type IV pilus minor pilin ComGG -
  H1W91_RS08890 (STHERMO_1969) comYF 1707906..1708343 (-) 438 WP_082309153.1 competence type IV pilus minor pilin ComGF Machinery gene
  H1W91_RS08895 (STHERMO_1970) comGE 1708327..1708620 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  H1W91_RS08900 (STHERMO_1971) comGD 1708592..1709020 (-) 429 WP_253269448.1 competence type IV pilus minor pilin ComGD -
  H1W91_RS08905 (STHERMO_1972) comYC 1708980..1709306 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  H1W91_RS08910 (STHERMO_1973) comYB 1709303..1710403 (-) 1101 WP_120764773.1 competence type IV pilus assembly protein ComGB Machinery gene
  H1W91_RS08915 (STHERMO_1974) comGA/cglA/cilD 1710285..1711226 (-) 942 WP_022096896.1 competence type IV pilus ATPase ComGA Machinery gene
  H1W91_RS08920 (STHERMO_1975) - 1711307..1711669 (-) 363 WP_014608746.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35896.04 Da        Isoelectric Point: 4.7876

>NTDB_id=1131606 H1W91_RS08880 WP_180477178.1 1706610..1707566(-) (comYH) [Streptococcus thermophilus isolate STH_CIRM_1050]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGTEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSHKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLQNPRILKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=1131606 H1W91_RS08880 WP_180477178.1 1706610..1707566(-) (comYH) [Streptococcus thermophilus isolate STH_CIRM_1050]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGACTGAGGTTGCTAATGAGCTCATCATCAAAAACAACG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCATAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAATATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGATCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.571

99.057

0.679
  comYH Streptococcus mutans UA140

68.571

99.057

0.679

Multiple sequence alignment