Detailed information NTG1131370

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: H1X63_RS09320
• Genome accession: NZ_LR822027
• Coordinates: 1805467..1805904 (-)
• Length: 145 a.a.
• NCBI ID: WP_179972343.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus isolate STH_CIRM_998
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1800467..1810904

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H1X63_RS09295 (STHERMO_2038)	-	1801265..1801927 (-)	663	WP_179972338.1	CPBP family intramembrane glutamic endopeptidase	-
H1X63_RS11290 (STHERMO_2040)	-	1802024..1802465 (-)	442	Protein_1773	CAAX protease	-
H1X63_RS09300 (STHERMO_2041)	-	1802477..1802674 (-)	198	WP_179972339.1	helix-turn-helix transcriptional regulator	-
H1X63_RS09305 (STHERMO_2042)	-	1802922..1804115 (-)	1194	WP_179972340.1	acetate kinase	-
H1X63_RS09310 (STHERMO_2043)	comYH	1804171..1805127 (-)	957	WP_179972341.1	class I SAM-dependent methyltransferase	Machinery gene
H1X63_RS09315 (STHERMO_2044)	comGG	1805178..1805489 (-)	312	WP_179972342.1	competence type IV pilus minor pilin ComGG	-
H1X63_RS09320 (STHERMO_2045)	comYF	1805467..1805904 (-)	438	WP_179972343.1	competence type IV pilus minor pilin ComGF	Machinery gene
H1X63_RS09325 (STHERMO_2046)	comGE	1805888..1806181 (-)	294	WP_179972344.1	competence type IV pilus minor pilin ComGE	-
H1X63_RS09330 (STHERMO_2047)	comGD	1806153..1806581 (-)	429	WP_269473123.1	competence type IV pilus minor pilin ComGD	-
H1X63_RS09335 (STHERMO_2048)	comYC	1806541..1806867 (-)	327	WP_179972346.1	competence type IV pilus major pilin ComGC	Machinery gene
H1X63_RS09340 (STHERMO_2049)	comYB	1806864..1807964 (-)	1101	WP_179973355.1	competence type IV pilus assembly protein ComGB	Machinery gene
H1X63_RS09345 (STHERMO_2050)	comGA/cglA/cilD	1807846..1808787 (-)	942	WP_179972347.1	competence type IV pilus ATPase ComGA	Machinery gene
H1X63_RS09350 (STHERMO_2051)	-	1808868..1809230 (-)	363	WP_179972348.1	DUF1033 family protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16330.76 Da
• Isoelectric Point: 8.4525

>NTDB_id=1131370 H1X63_RS09320 WP_179972343.1 1805467..1805904(-) (comYF) [Streptococcus thermophilus isolate STH_CIRM_998]
MYLSSNLRAFTLLECLVALLVIAGSVQVYQGLTTVLVSNVKQVRQQENQDWLLFVQQMEAELEGCQLVKVEGNKLYVKQD
NQDLAFGLSSASDFRKTNADGRGYQPMLFDVKSSKVSQKNQIVTIQVTLKNGLQRNFIYAFEKTG

Nucleotide

• Length: 438 bp

>NTDB_id=1131370 H1X63_RS09320 WP_179972343.1 1805467..1805904(-) (comYF) [Streptococcus thermophilus isolate STH_CIRM_998]
ATGTATCTAAGCAGTAATCTGCGTGCCTTTACCCTCTTGGAATGTCTAGTGGCCTTGTTGGTCATTGCTGGCTCAGTTCA
AGTTTATCAAGGGTTAACCACTGTACTTGTGAGTAATGTTAAGCAGGTAAGACAACAAGAAAACCAAGACTGGCTTCTAT
TTGTTCAACAAATGGAGGCAGAATTAGAAGGATGTCAGTTGGTCAAGGTAGAGGGGAATAAACTCTATGTCAAGCAGGAT
AATCAAGACTTGGCTTTTGGTCTTTCAAGTGCCTCTGATTTTCGAAAAACAAATGCTGACGGTCGAGGCTATCAACCAAT
GCTTTTCGATGTCAAATCTAGTAAGGTAAGTCAAAAGAACCAGATAGTTACCATCCAAGTGACTCTTAAAAATGGACTAC
AAAGGAATTTTATTTATGCTTTTGAAAAAACAGGTTAG

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (39-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	57.447	97.241	0.559
comYF	Streptococcus mutans UA159	56.738	97.241	0.552
comGF/cglF	Streptococcus pneumoniae D39	50	96.552	0.483
comGF/cglF	Streptococcus pneumoniae Rx1	50	96.552	0.483
comGF/cglF	Streptococcus pneumoniae R6	50	96.552	0.483
comGF/cglF	Streptococcus pneumoniae TIGR4	50	96.552	0.483
comGF/cglF	Streptococcus mitis NCTC 12261	48.227	97.241	0.469
comGF/cglF	Streptococcus mitis SK321	47.518	97.241	0.462
comGF	Lactococcus lactis subsp. cremoris KW2	46.377	95.172	0.441