Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H1W98_RS08955 Genome accession   NZ_LR822026
Coordinates   1745357..1745875 (-) Length   172 a.a.
NCBI ID   WP_180482385.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_967     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1740357..1750875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W98_RS08935 (STHERMO_2042) - 1742266..1743210 (+) 945 WP_179973033.1 magnesium transporter CorA family protein -
  H1W98_RS08940 (STHERMO_2043) - 1743281..1743952 (+) 672 WP_179972277.1 DUF1129 domain-containing protein -
  H1W98_RS08945 (STHERMO_2044) - 1744069..1744950 (+) 882 WP_179972278.1 DUF4300 family protein -
  H1W98_RS08950 (STHERMO_2045) rpsR 1745076..1745315 (-) 240 WP_002945024.1 30S ribosomal protein S18 -
  H1W98_RS08955 (STHERMO_2046) ssb 1745357..1745875 (-) 519 WP_180482385.1 single-stranded DNA-binding protein Machinery gene
  H1W98_RS08960 (STHERMO_2047) rpsF 1745887..1746177 (-) 291 WP_002951906.1 30S ribosomal protein S6 -
  H1W98_RS08965 (STHERMO_2048) - 1746396..1747349 (+) 954 WP_180482384.1 hypothetical protein -
  H1W98_RS08970 (STHERMO_2050) mutY 1748267..1749418 (+) 1152 WP_179972281.1 A/G-specific adenine glycosylase -
  H1W98_RS08975 (STHERMO_2053) - 1749745..1749996 (-) 252 WP_041829329.1 hypothetical protein -
  H1W98_RS08980 (STHERMO_2054) - 1750151..1750330 (-) 180 WP_232086239.1 hypothetical protein -
  H1W98_RS08985 (STHERMO_2055) - 1750317..1750493 (-) 177 WP_022096698.1 hypothetical protein -
  H1W98_RS10990 (STHERMO_2056) - 1750494..1750631 (-) 138 WP_232086238.1 hypothetical protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18724.46 Da        Isoelectric Point: 4.7482

>NTDB_id=1131301 H1W98_RS08955 WP_180482385.1 1745357..1745875(-) (ssb) [Streptococcus thermophilus isolate STH_CIRM_967]
MINNVVLVGRMTRDAELRYTPSNVAVATFSLAVNRNFKGANGERETDFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRAAREGHSGGSYNIGGFDNSNSFGSGASTGGSFGESQPAQSTPNFGRDESPFGNS
NPMDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1131301 H1W98_RS08955 WP_180482385.1 1745357..1745875(-) (ssb) [Streptococcus thermophilus isolate STH_CIRM_967]
ATGATTAATAATGTCGTACTCGTTGGTCGCATGACCCGTGATGCGGAGCTTCGTTACACACCAAGTAATGTTGCTGTTGC
AACATTCAGCCTTGCGGTTAATCGTAACTTTAAAGGTGCTAATGGTGAACGTGAAACTGACTTTATTAACTGTGTTATCT
GGCGCCAGCAGGCTGAAAATTTGGCTAACTGGGCTAAGAAAGGTGCATTGGTTGGAATTACAGGTCGTATTCAGACCCGT
AACTATGAAAATCAACAAGGTCAACGTGTTTACGTAACTGAAGTTGTCGCTGATAATTTCCAAATGTTGGAAAGCCGTGC
GGCACGTGAAGGTCATAGTGGTGGTTCATACAACATTGGAGGATTTGATAACTCAAATTCATTCGGTAGTGGAGCTTCCA
CTGGTGGTTCGTTTGGTGAATCACAACCTGCACAATCTACGCCAAACTTCGGTCGTGATGAAAGTCCATTTGGTAATTCA
AATCCAATGGATATTTCAGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.195

100

0.599
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.763

100

0.581
  ssb Glaesserella parasuis strain SC1401

32.461

100

0.36
  ssb Vibrio cholerae strain A1552

34.637

100

0.36

Multiple sequence alignment